miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3793 3' -55.8 NC_001650.1 + 139978 0.68 0.865542
Target:  5'- gGGGUCCAGGAagCAGGaaGCUAGG-CCAn -3'
miRNA:   3'- gUCUAGGUCCUg-GUCC--UGGUCUaGGU- -5'
3793 3' -55.8 NC_001650.1 + 122113 0.69 0.790843
Target:  5'- gAGAUCUuuGGCCAGGGCgGGGUCg- -3'
miRNA:   3'- gUCUAGGucCUGGUCCUGgUCUAGgu -5'
3793 3' -55.8 NC_001650.1 + 65865 0.69 0.817301
Target:  5'- aGGGUCgGGGACCAGG--CAGAUUCc -3'
miRNA:   3'- gUCUAGgUCCUGGUCCugGUCUAGGu -5'
3793 3' -55.8 NC_001650.1 + 122595 0.69 0.817301
Target:  5'- gGGcAUCCuGGACCAGaACCAGuUCCu -3'
miRNA:   3'- gUC-UAGGuCCUGGUCcUGGUCuAGGu -5'
3793 3' -55.8 NC_001650.1 + 151752 0.68 0.842268
Target:  5'- uCGGGUCCuGGuCCuGGAUCuGGUCCu -3'
miRNA:   3'- -GUCUAGGuCCuGGuCCUGGuCUAGGu -5'
3793 3' -55.8 NC_001650.1 + 130018 0.68 0.850223
Target:  5'- gAGG-CCGcGGGCCucaAGGGCCAGAUCg- -3'
miRNA:   3'- gUCUaGGU-CCUGG---UCCUGGUCUAGgu -5'
3793 3' -55.8 NC_001650.1 + 102333 0.68 0.857983
Target:  5'- gCAGAUCCcggGGGACCAcucCCAGAUaCCGg -3'
miRNA:   3'- -GUCUAGG---UCCUGGUccuGGUCUA-GGU- -5'
3793 3' -55.8 NC_001650.1 + 139594 0.68 0.857983
Target:  5'- gGGGUUUAGGaaGCUAGGccagagguccguGCCGGGUCCAg -3'
miRNA:   3'- gUCUAGGUCC--UGGUCC------------UGGUCUAGGU- -5'
3793 3' -55.8 NC_001650.1 + 131448 0.68 0.863295
Target:  5'- gCAGGgcgUCCuGGACgccuaccgcgccagCAGGAUCGGGUCCGc -3'
miRNA:   3'- -GUCU---AGGuCCUG--------------GUCCUGGUCUAGGU- -5'
3793 3' -55.8 NC_001650.1 + 102162 0.7 0.781729
Target:  5'- aCAGGUCCAGGACgggaacgAGGACgAGGggccCCAg -3'
miRNA:   3'- -GUCUAGGUCCUGg------UCCUGgUCUa---GGU- -5'
3793 3' -55.8 NC_001650.1 + 139795 0.71 0.703812
Target:  5'- gGGGUCCAGGAagCAGGaagcuagGCCAGGgggUCCAa -3'
miRNA:   3'- gUCUAGGUCCUg-GUCC-------UGGUCU---AGGU- -5'
3793 3' -55.8 NC_001650.1 + 139737 0.71 0.703812
Target:  5'- gGGGUCCAGGAagCAGGaagcuagGCCAGGgggUCCAg -3'
miRNA:   3'- gUCUAGGUCCUg-GUCC-------UGGUCU---AGGU- -5'
3793 3' -55.8 NC_001650.1 + 49094 0.8 0.26392
Target:  5'- cCAGAaCCAGGACCuGGACCAG-UCUAg -3'
miRNA:   3'- -GUCUaGGUCCUGGuCCUGGUCuAGGU- -5'
3793 3' -55.8 NC_001650.1 + 140114 0.78 0.347476
Target:  5'- gGGGUCCAGGAagCAGGaagcucacGCCGGGUCCAa -3'
miRNA:   3'- gUCUAGGUCCUg-GUCC--------UGGUCUAGGU- -5'
3793 3' -55.8 NC_001650.1 + 124462 0.75 0.466651
Target:  5'- aCAGAUCC-GGACCuGGcCCAGAgCCAg -3'
miRNA:   3'- -GUCUAGGuCCUGGuCCuGGUCUaGGU- -5'
3793 3' -55.8 NC_001650.1 + 150244 0.75 0.504432
Target:  5'- uGGAUCCGGG-CCAGGGUCAGAuuuugaUCCAa -3'
miRNA:   3'- gUCUAGGUCCuGGUCCUGGUCU------AGGU- -5'
3793 3' -55.8 NC_001650.1 + 139877 0.72 0.644311
Target:  5'- gGGGUCCAGGAagCAGGaaGCCAGGcuagggUCCAg -3'
miRNA:   3'- gUCUAGGUCCUg-GUCC--UGGUCU------AGGU- -5'
3793 3' -55.8 NC_001650.1 + 139924 0.72 0.654466
Target:  5'- gGGGUCCAGGAagCAGGAagcaauCCAGGggUCCAg -3'
miRNA:   3'- gUCUAGGUCCUg-GUCCU------GGUCU--AGGU- -5'
3793 3' -55.8 NC_001650.1 + 140006 0.72 0.654466
Target:  5'- gGGGUCCAGGAagCAGGAagcaaaCCAGGggUCCAg -3'
miRNA:   3'- gUCUAGGUCCUg-GUCCU------GGUCU--AGGU- -5'
3793 3' -55.8 NC_001650.1 + 140060 0.72 0.654466
Target:  5'- gGGGUCCAGGAagCAGGAagcaauCCAGGggUCCAg -3'
miRNA:   3'- gUCUAGGUCCUg-GUCCU------GGUCU--AGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.