miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3793 5' -56.1 NC_001650.1 + 77230 0.66 0.905333
Target:  5'- -aCGGGUCCAcGGACUGGGcUCAGAa- -3'
miRNA:   3'- ugGUCUAGGU-CCUGGUCCuGGUCUag -5'
3793 5' -56.1 NC_001650.1 + 145471 0.66 0.905333
Target:  5'- cGCCucaGGAUCCugagccugggaaAGGGCCGGGGgcuCCuGGUCa -3'
miRNA:   3'- -UGG---UCUAGG------------UCCUGGUCCU---GGuCUAG- -5'
3793 5' -56.1 NC_001650.1 + 102162 0.67 0.899046
Target:  5'- -aCAGGUCCAGGACgggaacgAGGACgAGGg- -3'
miRNA:   3'- ugGUCUAGGUCCUGg------UCCUGgUCUag -5'
3793 5' -56.1 NC_001650.1 + 141201 0.67 0.899046
Target:  5'- cGCCGGAcCCuGGAa-GGGAUgAGAUCg -3'
miRNA:   3'- -UGGUCUaGGuCCUggUCCUGgUCUAG- -5'
3793 5' -56.1 NC_001650.1 + 33926 0.67 0.89253
Target:  5'- cACUAc-UCCAGG-CCGGGAaCCAGAUg -3'
miRNA:   3'- -UGGUcuAGGUCCuGGUCCU-GGUCUAg -5'
3793 5' -56.1 NC_001650.1 + 87938 0.67 0.885789
Target:  5'- cUCGGAggagaagcggCGGGGCC-GGACCGGGUCg -3'
miRNA:   3'- uGGUCUag--------GUCCUGGuCCUGGUCUAG- -5'
3793 5' -56.1 NC_001650.1 + 46507 0.67 0.885789
Target:  5'- cCCGGcgUCGGGGCCGGcggcGACCGGGc- -3'
miRNA:   3'- uGGUCuaGGUCCUGGUC----CUGGUCUag -5'
3793 5' -56.1 NC_001650.1 + 36494 0.67 0.885789
Target:  5'- gACCGGGgggCAGGGCCAGG-CUGGggCu -3'
miRNA:   3'- -UGGUCUag-GUCCUGGUCCuGGUCuaG- -5'
3793 5' -56.1 NC_001650.1 + 156756 0.67 0.871645
Target:  5'- gGCCuGcUUCuGGACCcGGGCCAGGUa -3'
miRNA:   3'- -UGGuCuAGGuCCUGGuCCUGGUCUAg -5'
3793 5' -56.1 NC_001650.1 + 129409 0.67 0.871645
Target:  5'- aGCCGGGUCCAGaaGGCUAGG-CCAa--- -3'
miRNA:   3'- -UGGUCUAGGUC--CUGGUCCuGGUcuag -5'
3793 5' -56.1 NC_001650.1 + 60132 0.67 0.864253
Target:  5'- gGCCGcGUCCGcGGucuCCAGGGCCAGcagCa -3'
miRNA:   3'- -UGGUcUAGGU-CCu--GGUCCUGGUCua-G- -5'
3793 5' -56.1 NC_001650.1 + 65860 0.67 0.864253
Target:  5'- cCCAGAgggUCgGGGACCAGG--CAGAUUc -3'
miRNA:   3'- uGGUCU---AGgUCCUGGUCCugGUCUAG- -5'
3793 5' -56.1 NC_001650.1 + 154399 0.67 0.864253
Target:  5'- aAUCAGAggUCCAGGucacCCAGGAUCAcGUUg -3'
miRNA:   3'- -UGGUCU--AGGUCCu---GGUCCUGGUcUAG- -5'
3793 5' -56.1 NC_001650.1 + 43030 0.67 0.864253
Target:  5'- uCCAgGGUCCGgcGGGCCGGGGucacCCAGAguUCg -3'
miRNA:   3'- uGGU-CUAGGU--CCUGGUCCU----GGUCU--AG- -5'
3793 5' -56.1 NC_001650.1 + 139895 0.68 0.856654
Target:  5'- aGCCAGGcuagggUCCAGGAagcaauCCAGGGguCCAGGa- -3'
miRNA:   3'- -UGGUCU------AGGUCCU------GGUCCU--GGUCUag -5'
3793 5' -56.1 NC_001650.1 + 134289 0.68 0.856654
Target:  5'- cGCCcg--CCAGGccccCCAGGGCCAGAc- -3'
miRNA:   3'- -UGGucuaGGUCCu---GGUCCUGGUCUag -5'
3793 5' -56.1 NC_001650.1 + 49274 0.68 0.856654
Target:  5'- cACgAGAUcuaugaugaCCAGG-CCAGGAUCAGAc- -3'
miRNA:   3'- -UGgUCUA---------GGUCCuGGUCCUGGUCUag -5'
3793 5' -56.1 NC_001650.1 + 32475 0.68 0.856654
Target:  5'- ------nCCAGGACCAGGACCcGAg- -3'
miRNA:   3'- uggucuaGGUCCUGGUCCUGGuCUag -5'
3793 5' -56.1 NC_001650.1 + 139789 0.68 0.855882
Target:  5'- gGCCAGGgggUCCAGGAagCAGGaagcuagGCCAGGg- -3'
miRNA:   3'- -UGGUCU---AGGUCCUg-GUCC-------UGGUCUag -5'
3793 5' -56.1 NC_001650.1 + 108598 0.68 0.848854
Target:  5'- gGCCAG-UCCAGGGacgugCAGGGCCuGcUCu -3'
miRNA:   3'- -UGGUCuAGGUCCUg----GUCCUGGuCuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.