miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3794 3' -55.8 NC_001650.1 + 129553 0.66 0.938917
Target:  5'- aCGGGUCCAaaaGCCAGGuCCaaaauccagGGGUCCAa -3'
miRNA:   3'- -GUCUAGGUcc-UGGUCCuGG---------UCUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 26868 0.66 0.938917
Target:  5'- aGGGUCCuGGG-CAGGACCugcGAUCa- -3'
miRNA:   3'- gUCUAGGuCCUgGUCCUGGu--CUAGgu -5'
3794 3' -55.8 NC_001650.1 + 156083 0.66 0.938917
Target:  5'- gCAGGccUCgAGGACCccGGCCAGGUugcCCAg -3'
miRNA:   3'- -GUCU--AGgUCCUGGucCUGGUCUA---GGU- -5'
3794 3' -55.8 NC_001650.1 + 171384 0.66 0.936043
Target:  5'- gGGGUCCGGGGggucuuaaagacccuCUAGGACCAcccugCCAg -3'
miRNA:   3'- gUCUAGGUCCU---------------GGUCCUGGUcua--GGU- -5'
3794 3' -55.8 NC_001650.1 + 4677 0.66 0.936043
Target:  5'- gGGGUCCGGGGggucuuaaagacccuCUAGGACCAcccugCCAg -3'
miRNA:   3'- gUCUAGGUCCU---------------GGUCCUGGUcua--GGU- -5'
3794 3' -55.8 NC_001650.1 + 95455 0.66 0.93408
Target:  5'- -uGAcUCCuGGgacaugaccACCAGGACCuGAUCCu -3'
miRNA:   3'- guCU-AGGuCC---------UGGUCCUGGuCUAGGu -5'
3794 3' -55.8 NC_001650.1 + 111667 0.66 0.93408
Target:  5'- uCAGGgucccguucUCCAGGugguCCAGGAUgGGGUCg- -3'
miRNA:   3'- -GUCU---------AGGUCCu---GGUCCUGgUCUAGgu -5'
3794 3' -55.8 NC_001650.1 + 51500 0.66 0.933584
Target:  5'- -cGAgCCGGGgaacucggcgaacACCugcuucAGGGCCAGGUCCAu -3'
miRNA:   3'- guCUaGGUCC-------------UGG------UCCUGGUCUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 156979 0.66 0.929009
Target:  5'- gGGAUCCAccACCAGGcaguaguccGCCAGAgguaaaUCCAg -3'
miRNA:   3'- gUCUAGGUccUGGUCC---------UGGUCU------AGGU- -5'
3794 3' -55.8 NC_001650.1 + 83852 0.66 0.929009
Target:  5'- cCAGcUCCGcGACgAGGAgCGGGUCCu -3'
miRNA:   3'- -GUCuAGGUcCUGgUCCUgGUCUAGGu -5'
3794 3' -55.8 NC_001650.1 + 21669 0.66 0.923701
Target:  5'- uUAGA-CCAGGcCCGGGGCCuGggCUg -3'
miRNA:   3'- -GUCUaGGUCCuGGUCCUGGuCuaGGu -5'
3794 3' -55.8 NC_001650.1 + 33931 0.66 0.918158
Target:  5'- ---cUCCAGG-CCGGGAaCCAGAUgUAc -3'
miRNA:   3'- gucuAGGUCCuGGUCCU-GGUCUAgGU- -5'
3794 3' -55.8 NC_001650.1 + 160635 0.66 0.918158
Target:  5'- --uAUCCuggcuaugGGGGCCAGGGCCAGG-CUg -3'
miRNA:   3'- gucUAGG--------UCCUGGUCCUGGUCUaGGu -5'
3794 3' -55.8 NC_001650.1 + 64773 0.67 0.912379
Target:  5'- gCAGuucUUCAGGACCGGGAa-GGGUgCCAg -3'
miRNA:   3'- -GUCu--AGGUCCUGGUCCUggUCUA-GGU- -5'
3794 3' -55.8 NC_001650.1 + 119215 0.67 0.912379
Target:  5'- aGGGUCCAaGACCcGGGCUGGG-CCAc -3'
miRNA:   3'- gUCUAGGUcCUGGuCCUGGUCUaGGU- -5'
3794 3' -55.8 NC_001650.1 + 51610 0.67 0.912379
Target:  5'- gCAGGUUgGGGGCCAgcgccuccgcGGGCCAGuUCUu -3'
miRNA:   3'- -GUCUAGgUCCUGGU----------CCUGGUCuAGGu -5'
3794 3' -55.8 NC_001650.1 + 3348 0.67 0.906367
Target:  5'- aGGGUCCAuguGGGuCCAGGGaguCCGgGGUCCAu -3'
miRNA:   3'- gUCUAGGU---CCU-GGUCCU---GGU-CUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 170055 0.67 0.906367
Target:  5'- aGGGUCCAuguGGGuCCAGGGaguCCGgGGUCCAu -3'
miRNA:   3'- gUCUAGGU---CCU-GGUCCU---GGU-CUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 84057 0.67 0.905753
Target:  5'- uCAGAuguUUguGGACCGGGGCCccuuuauGGuGUCCAa -3'
miRNA:   3'- -GUCU---AGguCCUGGUCCUGG-------UC-UAGGU- -5'
3794 3' -55.8 NC_001650.1 + 154404 0.67 0.900124
Target:  5'- gAGGUCCAGGucacCCAGGAUCAcGUUg- -3'
miRNA:   3'- gUCUAGGUCCu---GGUCCUGGUcUAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.