Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3794 | 3' | -55.8 | NC_001650.1 | + | 32170 | 1.08 | 0.003777 |
Target: 5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3' miRNA: 3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5' |
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3794 | 3' | -55.8 | NC_001650.1 | + | 32392 | 1.08 | 0.003777 |
Target: 5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3' miRNA: 3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5' |
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3794 | 3' | -55.8 | NC_001650.1 | + | 32452 | 1.08 | 0.003777 |
Target: 5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3' miRNA: 3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5' |
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3794 | 3' | -55.8 | NC_001650.1 | + | 32356 | 1.08 | 0.003777 |
Target: 5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3' miRNA: 3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5' |
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3794 | 3' | -55.8 | NC_001650.1 | + | 32320 | 1.08 | 0.003777 |
Target: 5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3' miRNA: 3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5' |
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3794 | 3' | -55.8 | NC_001650.1 | + | 32248 | 1.08 | 0.003777 |
Target: 5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3' miRNA: 3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5' |
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3794 | 3' | -55.8 | NC_001650.1 | + | 32284 | 1.08 | 0.003777 |
Target: 5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3' miRNA: 3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5' |
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3794 | 3' | -55.8 | NC_001650.1 | + | 32206 | 1.08 | 0.003777 |
Target: 5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3' miRNA: 3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5' |
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3794 | 3' | -55.8 | NC_001650.1 | + | 32428 | 0.91 | 0.05092 |
Target: 5'- cCAGAUCCAGGACCAGGACCAGGa--- -3' miRNA: 3'- -GUCUAGGUCCUGGUCCUGGUCUaggu -5' |
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3794 | 3' | -55.8 | NC_001650.1 | + | 62428 | 0.8 | 0.26392 |
Target: 5'- uCGGGUCaAGGACCAGGuccaaguCCAGGUCCAg -3' miRNA: 3'- -GUCUAGgUCCUGGUCCu------GGUCUAGGU- -5' |
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3794 | 3' | -55.8 | NC_001650.1 | + | 49094 | 0.8 | 0.26392 |
Target: 5'- cCAGAaCCAGGACCuGGACCAG-UCUAg -3' miRNA: 3'- -GUCUaGGUCCUGGuCCUGGUCuAGGU- -5' |
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3794 | 3' | -55.8 | NC_001650.1 | + | 140114 | 0.78 | 0.347476 |
Target: 5'- gGGGUCCAGGAagCAGGaagcucacGCCGGGUCCAa -3' miRNA: 3'- gUCUAGGUCCUg-GUCC--------UGGUCUAGGU- -5' |
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3794 | 3' | -55.8 | NC_001650.1 | + | 124462 | 0.75 | 0.466651 |
Target: 5'- aCAGAUCC-GGACCuGGcCCAGAgCCAg -3' miRNA: 3'- -GUCUAGGuCCUGGuCCuGGUCUaGGU- -5' |
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3794 | 3' | -55.8 | NC_001650.1 | + | 150244 | 0.75 | 0.504432 |
Target: 5'- uGGAUCCGGG-CCAGGGUCAGAuuuugaUCCAa -3' miRNA: 3'- gUCUAGGUCCuGGUCCUGGUCU------AGGU- -5' |
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3794 | 3' | -55.8 | NC_001650.1 | + | 111740 | 0.74 | 0.543473 |
Target: 5'- gUAGG-CgAGGGCCAGGGCCAGGUUg- -3' miRNA: 3'- -GUCUaGgUCCUGGUCCUGGUCUAGgu -5' |
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3794 | 3' | -55.8 | NC_001650.1 | + | 67179 | 0.73 | 0.603675 |
Target: 5'- uCAGAUCCgcAGGGCgGcGGCCAGGUCCc -3' miRNA: 3'- -GUCUAGG--UCCUGgUcCUGGUCUAGGu -5' |
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3794 | 3' | -55.8 | NC_001650.1 | + | 139877 | 0.72 | 0.644311 |
Target: 5'- gGGGUCCAGGAagCAGGaaGCCAGGcuagggUCCAg -3' miRNA: 3'- gUCUAGGUCCUg-GUCC--UGGUCU------AGGU- -5' |
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3794 | 3' | -55.8 | NC_001650.1 | + | 139924 | 0.72 | 0.654466 |
Target: 5'- gGGGUCCAGGAagCAGGAagcaauCCAGGggUCCAg -3' miRNA: 3'- gUCUAGGUCCUg-GUCCU------GGUCU--AGGU- -5' |
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3794 | 3' | -55.8 | NC_001650.1 | + | 140006 | 0.72 | 0.654466 |
Target: 5'- gGGGUCCAGGAagCAGGAagcaaaCCAGGggUCCAg -3' miRNA: 3'- gUCUAGGUCCUg-GUCCU------GGUCU--AGGU- -5' |
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3794 | 3' | -55.8 | NC_001650.1 | + | 140060 | 0.72 | 0.654466 |
Target: 5'- gGGGUCCAGGAagCAGGAagcaauCCAGGggUCCAg -3' miRNA: 3'- gUCUAGGUCCUg-GUCCU------GGUCU--AGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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