miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3794 3' -55.8 NC_001650.1 + 121784 0.67 0.900124
Target:  5'- uGGA-CCuGGACUuGGACCuGGUCCu -3'
miRNA:   3'- gUCUaGGuCCUGGuCCUGGuCUAGGu -5'
3794 3' -55.8 NC_001650.1 + 106342 0.67 0.886952
Target:  5'- gAGcUCCAGGACCAGcgcGGCCuucUCCAc -3'
miRNA:   3'- gUCuAGGUCCUGGUC---CUGGucuAGGU- -5'
3794 3' -55.8 NC_001650.1 + 3565 0.67 0.886952
Target:  5'- cCAGAgUCCAgGGAUgGGGGCUccauggucccggGGGUCCAg -3'
miRNA:   3'- -GUCU-AGGU-CCUGgUCCUGG------------UCUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 170272 0.67 0.886952
Target:  5'- cCAGAgUCCAgGGAUgGGGGCUccauggucccggGGGUCCAg -3'
miRNA:   3'- -GUCU-AGGU-CCUGgUCCUGG------------UCUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 111018 0.68 0.872893
Target:  5'- aGGGUCgcgagaGGGACaGGGAguCCAGGUCCAa -3'
miRNA:   3'- gUCUAGg-----UCCUGgUCCU--GGUCUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 77230 0.68 0.865542
Target:  5'- aCGGGUCCAcGGACUGGGcUCAGAacaucgccUCCGu -3'
miRNA:   3'- -GUCUAGGU-CCUGGUCCuGGUCU--------AGGU- -5'
3794 3' -55.8 NC_001650.1 + 139978 0.68 0.865542
Target:  5'- gGGGUCCAGGAagCAGGaaGCUAGG-CCAn -3'
miRNA:   3'- gUCUAGGUCCUg-GUCC--UGGUCUaGGU- -5'
3794 3' -55.8 NC_001650.1 + 131448 0.68 0.863295
Target:  5'- gCAGGgcgUCCuGGACgccuaccgcgccagCAGGAUCGGGUCCGc -3'
miRNA:   3'- -GUCU---AGGuCCUG--------------GUCCUGGUCUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 100890 0.68 0.857983
Target:  5'- gCAGGUUCAGGACCucccucGACUGGGUCa- -3'
miRNA:   3'- -GUCUAGGUCCUGGuc----CUGGUCUAGgu -5'
3794 3' -55.8 NC_001650.1 + 139594 0.68 0.857983
Target:  5'- gGGGUUUAGGaaGCUAGGccagagguccguGCCGGGUCCAg -3'
miRNA:   3'- gUCUAGGUCC--UGGUCC------------UGGUCUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 102333 0.68 0.857983
Target:  5'- gCAGAUCCcggGGGACCAcucCCAGAUaCCGg -3'
miRNA:   3'- -GUCUAGG---UCCUGGUccuGGUCUA-GGU- -5'
3794 3' -55.8 NC_001650.1 + 130018 0.68 0.850223
Target:  5'- gAGG-CCGcGGGCCucaAGGGCCAGAUCg- -3'
miRNA:   3'- gUCUaGGU-CCUGG---UCCUGGUCUAGgu -5'
3794 3' -55.8 NC_001650.1 + 105141 0.68 0.850223
Target:  5'- cCGGAgCCAGGcCCGGGGCCcGAcgCCu -3'
miRNA:   3'- -GUCUaGGUCCuGGUCCUGGuCUa-GGu -5'
3794 3' -55.8 NC_001650.1 + 94904 0.68 0.850223
Target:  5'- cCAGGUCCAGGGucagCAGGGCguGcgCCc -3'
miRNA:   3'- -GUCUAGGUCCUg---GUCCUGguCuaGGu -5'
3794 3' -55.8 NC_001650.1 + 159084 0.68 0.850223
Target:  5'- gCAGGaCCAGGugucugccgucCCGGGAgCAGAUCCc -3'
miRNA:   3'- -GUCUaGGUCCu----------GGUCCUgGUCUAGGu -5'
3794 3' -55.8 NC_001650.1 + 151752 0.68 0.842268
Target:  5'- uCGGGUCCuGGuCCuGGAUCuGGUCCu -3'
miRNA:   3'- -GUCUAGGuCCuGGuCCUGGuCUAGGu -5'
3794 3' -55.8 NC_001650.1 + 38374 0.68 0.834125
Target:  5'- aCAGAUuaCCGGGGgCAGGGCguGGaCCAg -3'
miRNA:   3'- -GUCUA--GGUCCUgGUCCUGguCUaGGU- -5'
3794 3' -55.8 NC_001650.1 + 59750 0.69 0.8258
Target:  5'- --cAUCCAgcuggcucuGGGCCAGGuCCGGAUCUg -3'
miRNA:   3'- gucUAGGU---------CCUGGUCCuGGUCUAGGu -5'
3794 3' -55.8 NC_001650.1 + 129591 0.69 0.817301
Target:  5'- --aAUCCGGGggucgcgaGCCGGGguccaaaaGCCAGGUCCAa -3'
miRNA:   3'- gucUAGGUCC--------UGGUCC--------UGGUCUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 122595 0.69 0.817301
Target:  5'- gGGcAUCCuGGACCAGaACCAGuUCCu -3'
miRNA:   3'- gUC-UAGGuCCUGGUCcUGGUCuAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.