miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3794 3' -55.8 NC_001650.1 + 3348 0.67 0.906367
Target:  5'- aGGGUCCAuguGGGuCCAGGGaguCCGgGGUCCAu -3'
miRNA:   3'- gUCUAGGU---CCU-GGUCCU---GGU-CUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 3565 0.67 0.886952
Target:  5'- cCAGAgUCCAgGGAUgGGGGCUccauggucccggGGGUCCAg -3'
miRNA:   3'- -GUCU-AGGU-CCUGgUCCUGG------------UCUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 4677 0.66 0.936043
Target:  5'- gGGGUCCGGGGggucuuaaagacccuCUAGGACCAcccugCCAg -3'
miRNA:   3'- gUCUAGGUCCU---------------GGUCCUGGUcua--GGU- -5'
3794 3' -55.8 NC_001650.1 + 21669 0.66 0.923701
Target:  5'- uUAGA-CCAGGcCCGGGGCCuGggCUg -3'
miRNA:   3'- -GUCUaGGUCCuGGUCCUGGuCuaGGu -5'
3794 3' -55.8 NC_001650.1 + 26868 0.66 0.938917
Target:  5'- aGGGUCCuGGG-CAGGACCugcGAUCa- -3'
miRNA:   3'- gUCUAGGuCCUgGUCCUGGu--CUAGgu -5'
3794 3' -55.8 NC_001650.1 + 32170 1.08 0.003777
Target:  5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3'
miRNA:   3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 32206 1.08 0.003777
Target:  5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3'
miRNA:   3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 32248 1.08 0.003777
Target:  5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3'
miRNA:   3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 32284 1.08 0.003777
Target:  5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3'
miRNA:   3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 32320 1.08 0.003777
Target:  5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3'
miRNA:   3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 32356 1.08 0.003777
Target:  5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3'
miRNA:   3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 32392 1.08 0.003777
Target:  5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3'
miRNA:   3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 32428 0.91 0.05092
Target:  5'- cCAGAUCCAGGACCAGGACCAGGa--- -3'
miRNA:   3'- -GUCUAGGUCCUGGUCCUGGUCUaggu -5'
3794 3' -55.8 NC_001650.1 + 32452 1.08 0.003777
Target:  5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3'
miRNA:   3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 33931 0.66 0.918158
Target:  5'- ---cUCCAGG-CCGGGAaCCAGAUgUAc -3'
miRNA:   3'- gucuAGGUCCuGGUCCU-GGUCUAgGU- -5'
3794 3' -55.8 NC_001650.1 + 38374 0.68 0.834125
Target:  5'- aCAGAUuaCCGGGGgCAGGGCguGGaCCAg -3'
miRNA:   3'- -GUCUA--GGUCCUgGUCCUGguCUaGGU- -5'
3794 3' -55.8 NC_001650.1 + 43033 0.7 0.781729
Target:  5'- aGGGUCCGgcGGGCCGGGGucacCCAGAguucgcgCCAg -3'
miRNA:   3'- gUCUAGGU--CCUGGUCCU----GGUCUa------GGU- -5'
3794 3' -55.8 NC_001650.1 + 49094 0.8 0.26392
Target:  5'- cCAGAaCCAGGACCuGGACCAG-UCUAg -3'
miRNA:   3'- -GUCUaGGUCCUGGuCCUGGUCuAGGU- -5'
3794 3' -55.8 NC_001650.1 + 51500 0.66 0.933584
Target:  5'- -cGAgCCGGGgaacucggcgaacACCugcuucAGGGCCAGGUCCAu -3'
miRNA:   3'- guCUaGGUCC-------------UGG------UCCUGGUCUAGGU- -5'
3794 3' -55.8 NC_001650.1 + 51610 0.67 0.912379
Target:  5'- gCAGGUUgGGGGCCAgcgccuccgcGGGCCAGuUCUu -3'
miRNA:   3'- -GUCUAGgUCCUGGU----------CCUGGUCuAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.