miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3794 5' -56.1 NC_001650.1 + 101769 0.66 0.928148
Target:  5'- uCCAGAUCaGGGACCccGAgcCCAGGUa -3'
miRNA:   3'- uGGUCUAGgUCCUGGucCU--GGUCUAg -5'
3794 5' -56.1 NC_001650.1 + 122590 0.66 0.928148
Target:  5'- uGCCugGGcAUCCuGGACCAGaACCAGuUCc -3'
miRNA:   3'- -UGG--UC-UAGGuCCUGGUCcUGGUCuAG- -5'
3794 5' -56.1 NC_001650.1 + 52937 0.66 0.928148
Target:  5'- cCCGGcgCCcggaGGGGCCGGGGguucCCAGAc- -3'
miRNA:   3'- uGGUCuaGG----UCCUGGUCCU----GGUCUag -5'
3794 5' -56.1 NC_001650.1 + 173077 0.66 0.928148
Target:  5'- gUCAGGUCuCuGGAUCAGG-CUAGAUg -3'
miRNA:   3'- uGGUCUAG-GuCCUGGUCCuGGUCUAg -5'
3794 5' -56.1 NC_001650.1 + 6370 0.66 0.928148
Target:  5'- gUCAGGUCuCuGGAUCAGG-CUAGAUg -3'
miRNA:   3'- uGGUCUAG-GuCCUGGUCCuGGUCUAg -5'
3794 5' -56.1 NC_001650.1 + 171474 0.66 0.927623
Target:  5'- gGCCGGuaggccucugcaaAUCCAGG-CCGGGGCUcgagGGGUa -3'
miRNA:   3'- -UGGUC-------------UAGGUCCuGGUCCUGG----UCUAg -5'
3794 5' -56.1 NC_001650.1 + 4767 0.66 0.927623
Target:  5'- gGCCGGuaggccucugcaaAUCCAGG-CCGGGGCUcgagGGGUa -3'
miRNA:   3'- -UGGUC-------------UAGGUCCuGGUCCUGG----UCUAg -5'
3794 5' -56.1 NC_001650.1 + 159220 0.66 0.924966
Target:  5'- cACCAGccuGUCCAGGcacuCCGGGGagggggccccgaaccCCAGGUg -3'
miRNA:   3'- -UGGUC---UAGGUCCu---GGUCCU---------------GGUCUAg -5'
3794 5' -56.1 NC_001650.1 + 115260 0.66 0.922797
Target:  5'- cCCGGAgCCAGG-CCGGGcagggugguaGCCAGGg- -3'
miRNA:   3'- uGGUCUaGGUCCuGGUCC----------UGGUCUag -5'
3794 5' -56.1 NC_001650.1 + 156083 0.66 0.922797
Target:  5'- -gCAGGccUCgAGGACCccGGCCAGGUUg -3'
miRNA:   3'- ugGUCU--AGgUCCUGGucCUGGUCUAG- -5'
3794 5' -56.1 NC_001650.1 + 2831 0.66 0.921146
Target:  5'- cGCCGGGUCCGGGuCCgcgaggaggggGGGAgagaggccggccgcCCGGGUUc -3'
miRNA:   3'- -UGGUCUAGGUCCuGG-----------UCCU--------------GGUCUAG- -5'
3794 5' -56.1 NC_001650.1 + 169538 0.66 0.921146
Target:  5'- cGCCGGGUCCGGGuCCgcgaggaggggGGGAgagaggccggccgcCCGGGUUc -3'
miRNA:   3'- -UGGUCUAGGUCCuGG-----------UCCU--------------GGUCUAG- -5'
3794 5' -56.1 NC_001650.1 + 31217 0.66 0.917211
Target:  5'- aACgAGGUCCucaacggggcGGGCCGGGACgAGGg- -3'
miRNA:   3'- -UGgUCUAGGu---------CCUGGUCCUGgUCUag -5'
3794 5' -56.1 NC_001650.1 + 37327 0.66 0.917211
Target:  5'- -aCAGAUcCCGGGGCCaaugagagGGGAgCAGAg- -3'
miRNA:   3'- ugGUCUA-GGUCCUGG--------UCCUgGUCUag -5'
3794 5' -56.1 NC_001650.1 + 83851 0.66 0.917211
Target:  5'- cCCAGcUCCGcGACgAGGAgCGGGUCc -3'
miRNA:   3'- uGGUCuAGGUcCUGgUCCUgGUCUAG- -5'
3794 5' -56.1 NC_001650.1 + 139854 0.66 0.911389
Target:  5'- uGCUGGGUUCAGGAagcaauCCAGGGguCCAGGa- -3'
miRNA:   3'- -UGGUCUAGGUCCU------GGUCCU--GGUCUag -5'
3794 5' -56.1 NC_001650.1 + 86704 0.66 0.911389
Target:  5'- aACCAGGUCauccgCAGGAgccgaaCCAGGGCCgacaGGGUg -3'
miRNA:   3'- -UGGUCUAG-----GUCCU------GGUCCUGG----UCUAg -5'
3794 5' -56.1 NC_001650.1 + 59836 0.66 0.905333
Target:  5'- gGCCAuGGUCaCGGGcaggcagcCCAGGAUCAGAa- -3'
miRNA:   3'- -UGGU-CUAG-GUCCu-------GGUCCUGGUCUag -5'
3794 5' -56.1 NC_001650.1 + 51610 0.66 0.905333
Target:  5'- -gCAGGUUgGGGGCCAgcgccuccgcGGGCCAGuUCu -3'
miRNA:   3'- ugGUCUAGgUCCUGGU----------CCUGGUCuAG- -5'
3794 5' -56.1 NC_001650.1 + 77230 0.66 0.905333
Target:  5'- -aCGGGUCCAcGGACUGGGcUCAGAa- -3'
miRNA:   3'- ugGUCUAGGU-CCUGGUCCuGGUCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.