miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3794 5' -56.1 NC_001650.1 + 32168 1.08 0.003542
Target:  5'- gACCAGAUCCAGGACCAGGACCAGAUCc -3'
miRNA:   3'- -UGGUCUAGGUCCUGGUCCUGGUCUAG- -5'
3794 5' -56.1 NC_001650.1 + 32450 1.08 0.003542
Target:  5'- gACCAGAUCCAGGACCAGGACCAGAUCc -3'
miRNA:   3'- -UGGUCUAGGUCCUGGUCCUGGUCUAG- -5'
3794 5' -56.1 NC_001650.1 + 32390 1.08 0.003542
Target:  5'- gACCAGAUCCAGGACCAGGACCAGAUCc -3'
miRNA:   3'- -UGGUCUAGGUCCUGGUCCUGGUCUAG- -5'
3794 5' -56.1 NC_001650.1 + 32354 1.08 0.003542
Target:  5'- gACCAGAUCCAGGACCAGGACCAGAUCc -3'
miRNA:   3'- -UGGUCUAGGUCCUGGUCCUGGUCUAG- -5'
3794 5' -56.1 NC_001650.1 + 32318 1.08 0.003542
Target:  5'- gACCAGAUCCAGGACCAGGACCAGAUCc -3'
miRNA:   3'- -UGGUCUAGGUCCUGGUCCUGGUCUAG- -5'
3794 5' -56.1 NC_001650.1 + 32282 1.08 0.003542
Target:  5'- gACCAGAUCCAGGACCAGGACCAGAUCc -3'
miRNA:   3'- -UGGUCUAGGUCCUGGUCCUGGUCUAG- -5'
3794 5' -56.1 NC_001650.1 + 32246 1.08 0.003542
Target:  5'- gACCAGAUCCAGGACCAGGACCAGAUCc -3'
miRNA:   3'- -UGGUCUAGGUCCUGGUCCUGGUCUAG- -5'
3794 5' -56.1 NC_001650.1 + 32204 1.08 0.003542
Target:  5'- gACCAGAUCCAGGACCAGGACCAGAUCc -3'
miRNA:   3'- -UGGUCUAGGUCCUGGUCCUGGUCUAG- -5'
3794 5' -56.1 NC_001650.1 + 32426 0.96 0.021772
Target:  5'- gACCAGAUCCAGGACCAGGACCAGn-- -3'
miRNA:   3'- -UGGUCUAGGUCCUGGUCCUGGUCuag -5'
3794 5' -56.1 NC_001650.1 + 49093 0.81 0.206236
Target:  5'- uCCAGAaCCAGGACCuGGACCAG-UCu -3'
miRNA:   3'- uGGUCUaGGUCCUGGuCCUGGUCuAG- -5'
3794 5' -56.1 NC_001650.1 + 38380 0.76 0.428571
Target:  5'- uACCGGGggCAGGGCguGGACCAGcUCa -3'
miRNA:   3'- -UGGUCUagGUCCUGguCCUGGUCuAG- -5'
3794 5' -56.1 NC_001650.1 + 134931 0.75 0.464778
Target:  5'- gGCCAGcUCCAGGcCCGGGGgCAGcUCg -3'
miRNA:   3'- -UGGUCuAGGUCCuGGUCCUgGUCuAG- -5'
3794 5' -56.1 NC_001650.1 + 111740 0.74 0.502514
Target:  5'- -gUAGG-CgAGGGCCAGGGCCAGGUUg -3'
miRNA:   3'- ugGUCUaGgUCCUGGUCCUGGUCUAG- -5'
3794 5' -56.1 NC_001650.1 + 59736 0.74 0.512159
Target:  5'- uGCCAGuaaugauucAUCCAgcuggcucuGGGCCAGGuCCGGAUCu -3'
miRNA:   3'- -UGGUC---------UAGGU---------CCUGGUCCuGGUCUAG- -5'
3794 5' -56.1 NC_001650.1 + 62425 0.74 0.512159
Target:  5'- gGCuCGGGUCaAGGACCAGGuccaaguCCAGGUCc -3'
miRNA:   3'- -UG-GUCUAGgUCCUGGUCCu------GGUCUAG- -5'
3794 5' -56.1 NC_001650.1 + 53457 0.74 0.516039
Target:  5'- cACCAGGggccccagccucuucUCCAccucGGACCucAGGGCCAGGUCc -3'
miRNA:   3'- -UGGUCU---------------AGGU----CCUGG--UCCUGGUCUAG- -5'
3794 5' -56.1 NC_001650.1 + 105410 0.74 0.531671
Target:  5'- cACCAGGUUCAGGGCCgAGcGCCGG-UCg -3'
miRNA:   3'- -UGGUCUAGGUCCUGG-UCcUGGUCuAG- -5'
3794 5' -56.1 NC_001650.1 + 159631 0.73 0.571436
Target:  5'- cGCCAGGUCCAGGugggacaccGCCAGGGC---GUCg -3'
miRNA:   3'- -UGGUCUAGGUCC---------UGGUCCUGgucUAG- -5'
3794 5' -56.1 NC_001650.1 + 58999 0.73 0.571436
Target:  5'- uGCCAGAgauugaaagCCGGGGCCccgucgccuccGGGGCgGGAUCu -3'
miRNA:   3'- -UGGUCUa--------GGUCCUGG-----------UCCUGgUCUAG- -5'
3794 5' -56.1 NC_001650.1 + 67197 0.73 0.581499
Target:  5'- gGCCAGGUCCccguuuguGGACCAGaGCCAG-UCc -3'
miRNA:   3'- -UGGUCUAGGu-------CCUGGUCcUGGUCuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.