miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3795 3' -57 NC_001650.1 + 95086 0.66 0.89253
Target:  5'- uGGCCAucUCCAGGGCCAcaGACCcaAGAc -3'
miRNA:   3'- -CUGGUcuAGGUCCUGGUc-CUGG--UCUa -5'
3795 3' -57 NC_001650.1 + 87028 0.66 0.885789
Target:  5'- aGACCAGcaucUCCAGGcCCAGG--CAGAa -3'
miRNA:   3'- -CUGGUCu---AGGUCCuGGUCCugGUCUa -5'
3795 3' -57 NC_001650.1 + 108597 0.66 0.885789
Target:  5'- gGGCCAG-UCCAGGGacgugCAGGGCCu--- -3'
miRNA:   3'- -CUGGUCuAGGUCCUg----GUCCUGGucua -5'
3795 3' -57 NC_001650.1 + 158659 0.66 0.885789
Target:  5'- cGGCUacggGGGUCCAGGuggcuaaccugACCucgGGGGCCAGGa -3'
miRNA:   3'- -CUGG----UCUAGGUCC-----------UGG---UCCUGGUCUa -5'
3795 3' -57 NC_001650.1 + 46507 0.66 0.885789
Target:  5'- -cCCGGcgUCGGGGCCGGcggcGACCGGGc -3'
miRNA:   3'- cuGGUCuaGGUCCUGGUC----CUGGUCUa -5'
3795 3' -57 NC_001650.1 + 58999 0.66 0.885789
Target:  5'- uGCCAGAgauugaaagCCGGGGCCccgucgccuccGGGGCgGGAUc -3'
miRNA:   3'- cUGGUCUa--------GGUCCUGG-----------UCCUGgUCUA- -5'
3795 3' -57 NC_001650.1 + 43030 0.66 0.878825
Target:  5'- -uCCAgGGUCCGgcGGGCCGGGGucacCCAGAg -3'
miRNA:   3'- cuGGU-CUAGGU--CCUGGUCCU----GGUCUa -5'
3795 3' -57 NC_001650.1 + 149035 0.66 0.871645
Target:  5'- cACCGGGUCCAgGGugCuGGugUGGGg -3'
miRNA:   3'- cUGGUCUAGGU-CCugGuCCugGUCUa -5'
3795 3' -57 NC_001650.1 + 159063 0.66 0.870915
Target:  5'- aGCUGGcggugauAUCguGGAgCAGGACCAGGUg -3'
miRNA:   3'- cUGGUC-------UAGguCCUgGUCCUGGUCUA- -5'
3795 3' -57 NC_001650.1 + 116437 0.66 0.867235
Target:  5'- -uCCAGGUCguGGcugugaaagucggccACCAGGGCCuGGAUg -3'
miRNA:   3'- cuGGUCUAGguCC---------------UGGUCCUGG-UCUA- -5'
3795 3' -57 NC_001650.1 + 26407 0.66 0.864253
Target:  5'- uGACCAcGUCCAGGuuCaugaGGGGCCAGu- -3'
miRNA:   3'- -CUGGUcUAGGUCCu-Gg---UCCUGGUCua -5'
3795 3' -57 NC_001650.1 + 129409 0.66 0.864253
Target:  5'- aGCCGGGUCCAGaaGGCUAGG-CCAa-- -3'
miRNA:   3'- cUGGUCUAGGUC--CUGGUCCuGGUcua -5'
3795 3' -57 NC_001650.1 + 139609 0.67 0.848854
Target:  5'- aGGCCAGAggUCCGu-GCCGGGuCCAGAc -3'
miRNA:   3'- -CUGGUCU--AGGUccUGGUCCuGGUCUa -5'
3795 3' -57 NC_001650.1 + 134289 0.67 0.848854
Target:  5'- cGCCcg--CCAGGccccCCAGGGCCAGAc -3'
miRNA:   3'- cUGGucuaGGUCCu---GGUCCUGGUCUa -5'
3795 3' -57 NC_001650.1 + 4766 0.67 0.848063
Target:  5'- aGGCCGGuaggccucugcaaAUCCAGG-CCGGGGCUcGAg -3'
miRNA:   3'- -CUGGUC-------------UAGGUCCuGGUCCUGGuCUa -5'
3795 3' -57 NC_001650.1 + 171473 0.67 0.848063
Target:  5'- aGGCCGGuaggccucugcaaAUCCAGG-CCGGGGCUcGAg -3'
miRNA:   3'- -CUGGUC-------------UAGGUCCuGGUCCUGGuCUa -5'
3795 3' -57 NC_001650.1 + 75548 0.67 0.84086
Target:  5'- cGGCCAGGUCCAGcaggccGugCAGG-UCGGGg -3'
miRNA:   3'- -CUGGUCUAGGUC------CugGUCCuGGUCUa -5'
3795 3' -57 NC_001650.1 + 59736 0.67 0.84086
Target:  5'- uGCCAGuaaugauucAUCCAgcuggcucuGGGCCAGGuCCGGAUc -3'
miRNA:   3'- cUGGUC---------UAGGU---------CCUGGUCCuGGUCUA- -5'
3795 3' -57 NC_001650.1 + 160624 0.67 0.835973
Target:  5'- -gUCAcGUCCucuauccuggcuaugGGGGCCAGGGCCAGGc -3'
miRNA:   3'- cuGGUcUAGG---------------UCCUGGUCCUGGUCUa -5'
3795 3' -57 NC_001650.1 + 128758 0.67 0.832678
Target:  5'- cGCCGuGUCCAGGACCcuGACCGu-- -3'
miRNA:   3'- cUGGUcUAGGUCCUGGucCUGGUcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.