miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3795 3' -57 NC_001650.1 + 4766 0.67 0.848063
Target:  5'- aGGCCGGuaggccucugcaaAUCCAGG-CCGGGGCUcGAg -3'
miRNA:   3'- -CUGGUC-------------UAGGUCCuGGUCCUGGuCUa -5'
3795 3' -57 NC_001650.1 + 21671 0.71 0.62204
Target:  5'- aGACCAGGcCCGGGGCCuGGGCUg--- -3'
miRNA:   3'- -CUGGUCUaGGUCCUGGuCCUGGucua -5'
3795 3' -57 NC_001650.1 + 26407 0.66 0.864253
Target:  5'- uGACCAcGUCCAGGuuCaugaGGGGCCAGu- -3'
miRNA:   3'- -CUGGUcUAGGUCCu-Gg---UCCUGGUCua -5'
3795 3' -57 NC_001650.1 + 32167 1.05 0.004798
Target:  5'- gGACCAGAUCCAGGACCAGGACCAGAUc -3'
miRNA:   3'- -CUGGUCUAGGUCCUGGUCCUGGUCUA- -5'
3795 3' -57 NC_001650.1 + 32203 1.05 0.004798
Target:  5'- gGACCAGAUCCAGGACCAGGACCAGAUc -3'
miRNA:   3'- -CUGGUCUAGGUCCUGGUCCUGGUCUA- -5'
3795 3' -57 NC_001650.1 + 32228 0.68 0.761406
Target:  5'- ------nUCCAGGACCAGGACCAn-- -3'
miRNA:   3'- cuggucuAGGUCCUGGUCCUGGUcua -5'
3795 3' -57 NC_001650.1 + 32245 1.05 0.004798
Target:  5'- gGACCAGAUCCAGGACCAGGACCAGAUc -3'
miRNA:   3'- -CUGGUCUAGGUCCUGGUCCUGGUCUA- -5'
3795 3' -57 NC_001650.1 + 32281 1.05 0.004798
Target:  5'- gGACCAGAUCCAGGACCAGGACCAGAUc -3'
miRNA:   3'- -CUGGUCUAGGUCCUGGUCCUGGUCUA- -5'
3795 3' -57 NC_001650.1 + 32317 1.05 0.004798
Target:  5'- gGACCAGAUCCAGGACCAGGACCAGAUc -3'
miRNA:   3'- -CUGGUCUAGGUCCUGGUCCUGGUCUA- -5'
3795 3' -57 NC_001650.1 + 32353 1.05 0.004798
Target:  5'- gGACCAGAUCCAGGACCAGGACCAGAUc -3'
miRNA:   3'- -CUGGUCUAGGUCCUGGUCCUGGUCUA- -5'
3795 3' -57 NC_001650.1 + 32389 1.05 0.004798
Target:  5'- gGACCAGAUCCAGGACCAGGACCAGAUc -3'
miRNA:   3'- -CUGGUCUAGGUCCUGGUCCUGGUCUA- -5'
3795 3' -57 NC_001650.1 + 32425 0.95 0.022375
Target:  5'- gGACCAGAUCCAGGACCAGGACCAn-- -3'
miRNA:   3'- -CUGGUCUAGGUCCUGGUCCUGGUcua -5'
3795 3' -57 NC_001650.1 + 32449 1.05 0.004798
Target:  5'- gGACCAGAUCCAGGACCAGGACCAGAUc -3'
miRNA:   3'- -CUGGUCUAGGUCCUGGUCCUGGUCUA- -5'
3795 3' -57 NC_001650.1 + 32474 0.7 0.682913
Target:  5'- ------nUCCAGGACCAGGACCcGAg -3'
miRNA:   3'- cuggucuAGGUCCUGGUCCUGGuCUa -5'
3795 3' -57 NC_001650.1 + 36493 0.69 0.732571
Target:  5'- gGACCGGGgggCAGGGCCAGG-CUGGGg -3'
miRNA:   3'- -CUGGUCUag-GUCCUGGUCCuGGUCUa -5'
3795 3' -57 NC_001650.1 + 38380 0.7 0.662697
Target:  5'- uACCGGGggCAGGGCguGGACCAGc- -3'
miRNA:   3'- cUGGUCUagGUCCUGguCCUGGUCua -5'
3795 3' -57 NC_001650.1 + 43030 0.66 0.878825
Target:  5'- -uCCAgGGUCCGgcGGGCCGGGGucacCCAGAg -3'
miRNA:   3'- cuGGU-CUAGGU--CCUGGUCCU----GGUCUa -5'
3795 3' -57 NC_001650.1 + 45994 0.68 0.807083
Target:  5'- uGGCCgAGAgCgCAGGGCCAaucacGGGCCAGGa -3'
miRNA:   3'- -CUGG-UCUaG-GUCCUGGU-----CCUGGUCUa -5'
3795 3' -57 NC_001650.1 + 46507 0.66 0.885789
Target:  5'- -cCCGGcgUCGGGGCCGGcggcGACCGGGc -3'
miRNA:   3'- cuGGUCuaGGUCCUGGUC----CUGGUCUa -5'
3795 3' -57 NC_001650.1 + 49093 0.78 0.28172
Target:  5'- -uCCAGAaCCAGGACCuGGACCAGu- -3'
miRNA:   3'- cuGGUCUaGGUCCUGGuCCUGGUCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.