miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3795 5' -56.4 NC_001650.1 + 68804 0.66 0.934688
Target:  5'- uGGGgCAGG-CCGGGGCCcucgcucgaGGGGCgGGGc -3'
miRNA:   3'- -CCUgGUCUaGGUCCUGG---------UCCUGgUCU- -5'
3795 5' -56.4 NC_001650.1 + 86704 0.66 0.934688
Target:  5'- -aACCAGGUCauccgCAGGAgccgaaCCAGGGCCGa- -3'
miRNA:   3'- ccUGGUCUAG-----GUCCU------GGUCCUGGUcu -5'
3795 5' -56.4 NC_001650.1 + 41863 0.66 0.934688
Target:  5'- aGACCAGcUCCAGGAaguCCGcGGCCGc- -3'
miRNA:   3'- cCUGGUCuAGGUCCU---GGUcCUGGUcu -5'
3795 5' -56.4 NC_001650.1 + 40482 0.66 0.934688
Target:  5'- gGGGCCuuguagggguGGAacuugUUCAGGGaccUCAGGGCCAGGc -3'
miRNA:   3'- -CCUGG----------UCU-----AGGUCCU---GGUCCUGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 43932 0.66 0.932726
Target:  5'- gGGGCCAGAaucgaggauucaaUCCGccgguggagcucccGGGCCGGGcugagcCCAGGg -3'
miRNA:   3'- -CCUGGUCU-------------AGGU--------------CCUGGUCCu-----GGUCU- -5'
3795 5' -56.4 NC_001650.1 + 143381 0.66 0.931731
Target:  5'- aGACCAgGAUgucacucucaaaacaCCGGGAugcgaCCAGGAUUAGAa -3'
miRNA:   3'- cCUGGU-CUA---------------GGUCCU-----GGUCCUGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 52862 0.66 0.929714
Target:  5'- uGGCCAGAgucccguaCAGGGCCcccGGCCGGGc -3'
miRNA:   3'- cCUGGUCUag------GUCCUGGuc-CUGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 121796 0.66 0.929714
Target:  5'- uGGACCuGGUCCuuGACCcgagccuGGGCCuGGg -3'
miRNA:   3'- -CCUGGuCUAGGucCUGGu------CCUGGuCU- -5'
3795 5' -56.4 NC_001650.1 + 139938 0.66 0.929204
Target:  5'- aGGAagcaauCCAGGggUCCAGGAagcaggaagcaauCCAGGGguCCAGGa -3'
miRNA:   3'- -CCU------GGUCU--AGGUCCU-------------GGUCCU--GGUCU- -5'
3795 5' -56.4 NC_001650.1 + 58078 0.66 0.92662
Target:  5'- uGAUgAGAUCCucgcagccgcccgccGGGGCCuGGGCCGcGAa -3'
miRNA:   3'- cCUGgUCUAGG---------------UCCUGGuCCUGGU-CU- -5'
3795 5' -56.4 NC_001650.1 + 4581 0.66 0.924511
Target:  5'- uGGAgCUAGggUUAGGGCUAGGGuuAGAg -3'
miRNA:   3'- -CCU-GGUCuaGGUCCUGGUCCUggUCU- -5'
3795 5' -56.4 NC_001650.1 + 122192 0.66 0.924511
Target:  5'- uGGACCAcuUCCAcGaGGCCuGGACCGc- -3'
miRNA:   3'- -CCUGGUcuAGGU-C-CUGGuCCUGGUcu -5'
3795 5' -56.4 NC_001650.1 + 171420 0.66 0.924511
Target:  5'- uGGAgCUAGggUUAGGGCUAGGGuuAGAg -3'
miRNA:   3'- -CCU-GGUCuaGGUCCUGGUCCUggUCU- -5'
3795 5' -56.4 NC_001650.1 + 171204 0.66 0.924511
Target:  5'- uGGAgCUAGggUUAGGGCUAGGGuuAGAg -3'
miRNA:   3'- -CCU-GGUCuaGGUCCUGGUCCUggUCU- -5'
3795 5' -56.4 NC_001650.1 + 171336 0.66 0.924511
Target:  5'- uGGAgCUAGggUUAGGGCUAGGGuuAGAg -3'
miRNA:   3'- -CCU-GGUCuaGGUCCUGGUCCUggUCU- -5'
3795 5' -56.4 NC_001650.1 + 4497 0.66 0.924511
Target:  5'- uGGAgCUAGggUUAGGGCUAGGGuuAGAg -3'
miRNA:   3'- -CCU-GGUCuaGGUCCUGGUCCUggUCU- -5'
3795 5' -56.4 NC_001650.1 + 182228 0.66 0.924511
Target:  5'- uGGGCCGGGUCaggGGGAUgAGGuagacuguuGCUAGGu -3'
miRNA:   3'- -CCUGGUCUAGg--UCCUGgUCC---------UGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 4629 0.66 0.924511
Target:  5'- uGGAgCUAGggUUAGGGCUAGGGuuAGAg -3'
miRNA:   3'- -CCU-GGUCuaGGUCCUGGUCCUggUCU- -5'
3795 5' -56.4 NC_001650.1 + 171655 0.66 0.924511
Target:  5'- aGGCUAGggUUAGGGuuAGGGCUAGGg -3'
miRNA:   3'- cCUGGUCuaGGUCCUggUCCUGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 53418 0.66 0.924511
Target:  5'- -cGCCAGGUCCGGGGcguCCAGcGCCu-- -3'
miRNA:   3'- ccUGGUCUAGGUCCU---GGUCcUGGucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.