miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3795 5' -56.4 NC_001650.1 + 143573 0.66 0.924511
Target:  5'- gGGGCgAGggUgAGGGCgAGGGCUGGGu -3'
miRNA:   3'- -CCUGgUCuaGgUCCUGgUCCUGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 171655 0.66 0.924511
Target:  5'- aGGCUAGggUUAGGGuuAGGGCUAGGg -3'
miRNA:   3'- cCUGGUCuaGGUCCUggUCCUGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 4713 0.66 0.924511
Target:  5'- uGGAgCUAGggUUAGGGCUAGGGuuAGAg -3'
miRNA:   3'- -CCU-GGUCuaGGUCCUGGUCCUggUCU- -5'
3795 5' -56.4 NC_001650.1 + 171420 0.66 0.924511
Target:  5'- uGGAgCUAGggUUAGGGCUAGGGuuAGAg -3'
miRNA:   3'- -CCU-GGUCuaGGUCCUGGUCCUggUCU- -5'
3795 5' -56.4 NC_001650.1 + 4497 0.66 0.924511
Target:  5'- uGGAgCUAGggUUAGGGCUAGGGuuAGAg -3'
miRNA:   3'- -CCU-GGUCuaGGUCCUGGUCCUggUCU- -5'
3795 5' -56.4 NC_001650.1 + 111225 0.66 0.923978
Target:  5'- aGGAgCAGGgagagAGGAggcagaugcugccCCAGGGCCAGAa -3'
miRNA:   3'- -CCUgGUCUagg--UCCU-------------GGUCCUGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 30993 0.66 0.919078
Target:  5'- aGGCgCGGAUgcaCAGGAgCAGGGCCuGGc -3'
miRNA:   3'- cCUG-GUCUAg--GUCCUgGUCCUGGuCU- -5'
3795 5' -56.4 NC_001650.1 + 43030 0.66 0.919078
Target:  5'- --uCCAgGGUCCGgcGGGCCGGGGucacCCAGAg -3'
miRNA:   3'- ccuGGU-CUAGGU--CCUGGUCCU----GGUCU- -5'
3795 5' -56.4 NC_001650.1 + 85518 0.66 0.919078
Target:  5'- uGGGCCAGGUCCAG-ACCcu-GCUGGGg -3'
miRNA:   3'- -CCUGGUCUAGGUCcUGGuccUGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 62146 0.66 0.919078
Target:  5'- aGGCCAGggUCAGGgggcGCCugauguGGGCCAGc -3'
miRNA:   3'- cCUGGUCuaGGUCC----UGGu-----CCUGGUCu -5'
3795 5' -56.4 NC_001650.1 + 32227 0.66 0.913416
Target:  5'- ------nAUCCAGGACCAGGACCn-- -3'
miRNA:   3'- ccuggucUAGGUCCUGGUCCUGGucu -5'
3795 5' -56.4 NC_001650.1 + 151747 0.66 0.913416
Target:  5'- cGGGCuCGGGUCCuGGuCCuGGAUCuGGu -3'
miRNA:   3'- -CCUG-GUCUAGGuCCuGGuCCUGGuCU- -5'
3795 5' -56.4 NC_001650.1 + 112167 0.66 0.913416
Target:  5'- uGACCAGggCCuGcuCCAGGGCCAc- -3'
miRNA:   3'- cCUGGUCuaGGuCcuGGUCCUGGUcu -5'
3795 5' -56.4 NC_001650.1 + 149035 0.66 0.913416
Target:  5'- -cACCGGGUCCAgGGugCuGGugUGGGg -3'
miRNA:   3'- ccUGGUCUAGGU-CCugGuCCugGUCU- -5'
3795 5' -56.4 NC_001650.1 + 66864 0.66 0.913416
Target:  5'- gGGGCCgcgGGAggcgCCGGGggcgggggcgaGCCgGGGGCCGGGg -3'
miRNA:   3'- -CCUGG---UCUa---GGUCC-----------UGG-UCCUGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 102321 0.67 0.907526
Target:  5'- gGGACCcgcccagcAGAUCCcggGGGACCAcucCCAGAu -3'
miRNA:   3'- -CCUGG--------UCUAGG---UCCUGGUccuGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 159080 0.67 0.907526
Target:  5'- uGGAgCAGGaCCAGGugucugccgucCCGGGAgCAGAu -3'
miRNA:   3'- -CCUgGUCUaGGUCCu----------GGUCCUgGUCU- -5'
3795 5' -56.4 NC_001650.1 + 59736 0.67 0.907526
Target:  5'- -uGCCAGuaaugauucAUCCAgcuggcucuGGGCCAGGuCCGGAu -3'
miRNA:   3'- ccUGGUC---------UAGGU---------CCUGGUCCuGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 113563 0.67 0.907526
Target:  5'- uGGGCCuuGUCCAGGAagaAGGugugcuccACCAGGu -3'
miRNA:   3'- -CCUGGucUAGGUCCUgg-UCC--------UGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 53457 0.67 0.903884
Target:  5'- -cACCAGGggccccagccucuucUCCAccucGGACCucAGGGCCAGGu -3'
miRNA:   3'- ccUGGUCU---------------AGGU----CCUGG--UCCUGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.