miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3795 5' -56.4 NC_001650.1 + 4766 0.68 0.835972
Target:  5'- aGGCCGGuaggccucugcaaAUCCAGG-CCGGGGCUcGAg -3'
miRNA:   3'- cCUGGUC-------------UAGGUCCuGGUCCUGGuCU- -5'
3795 5' -56.4 NC_001650.1 + 60131 0.7 0.729322
Target:  5'- aGGCCGcGUCCGcGGucuCCAGGGCCAGc -3'
miRNA:   3'- cCUGGUcUAGGU-CCu--GGUCCUGGUCu -5'
3795 5' -56.4 NC_001650.1 + 139899 0.7 0.748439
Target:  5'- aGGCUAgGGUCCAGGAagcaauCCAGGGguCCAGGa -3'
miRNA:   3'- cCUGGU-CUAGGUCCU------GGUCCU--GGUCU- -5'
3795 5' -56.4 NC_001650.1 + 110693 0.7 0.757854
Target:  5'- cGGACCGGGacCCAGcGGgCAGG-CCAGGc -3'
miRNA:   3'- -CCUGGUCUa-GGUC-CUgGUCCuGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 59835 0.69 0.785425
Target:  5'- cGGCCAuGGUCaCGGGcaggcagcCCAGGAUCAGAa -3'
miRNA:   3'- cCUGGU-CUAG-GUCCu-------GGUCCUGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 45994 0.69 0.794362
Target:  5'- uGGCCgAGAgCgCAGGGCCAaucacGGGCCAGGa -3'
miRNA:   3'- cCUGG-UCUaG-GUCCUGGU-----CCUGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 128755 0.69 0.811806
Target:  5'- gGGcGCCGuGUCCAGGACCcuGACCGu- -3'
miRNA:   3'- -CC-UGGUcUAGGUCCUGGucCUGGUcu -5'
3795 5' -56.4 NC_001650.1 + 102170 0.68 0.828624
Target:  5'- aGGACgGGAaCgAGGACgAGGGgccCCAGAg -3'
miRNA:   3'- -CCUGgUCUaGgUCCUGgUCCU---GGUCU- -5'
3795 5' -56.4 NC_001650.1 + 46570 0.68 0.828624
Target:  5'- gGGAUUAGcUCCGcGGCUuaaGGGACCAGAc -3'
miRNA:   3'- -CCUGGUCuAGGUcCUGG---UCCUGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 139788 0.7 0.728358
Target:  5'- aGGCCAGGgggUCCAGGAagCAGGaagcuagGCCAGGg -3'
miRNA:   3'- cCUGGUCU---AGGUCCUg-GUCC-------UGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 139730 0.71 0.716719
Target:  5'- aGGCCAGGgggUCCAGGaagcaggaagcuagGCCAGGGgguCCAGGa -3'
miRNA:   3'- cCUGGUCU---AGGUCC--------------UGGUCCU---GGUCU- -5'
3795 5' -56.4 NC_001650.1 + 35287 0.72 0.660324
Target:  5'- cGGGCCGGGgaCGGGcgcggGCCAGGGCCAc- -3'
miRNA:   3'- -CCUGGUCUagGUCC-----UGGUCCUGGUcu -5'
3795 5' -56.4 NC_001650.1 + 124457 0.8 0.271354
Target:  5'- cGGACaCAGAUCC-GGACCuGGcCCAGAg -3'
miRNA:   3'- -CCUG-GUCUAGGuCCUGGuCCuGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 49093 0.79 0.311219
Target:  5'- --uCCAGAaCCAGGACCuGGACCAGu -3'
miRNA:   3'- ccuGGUCUaGGUCCUGGuCCUGGUCu -5'
3795 5' -56.4 NC_001650.1 + 36492 0.75 0.474389
Target:  5'- gGGACCGGGgggCAGGGCCAGG-CUGGGg -3'
miRNA:   3'- -CCUGGUCUag-GUCCUGGUCCuGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 66915 0.75 0.483651
Target:  5'- gGGGCCGGGgagcaUGGGGCCGGGGCgCGGAu -3'
miRNA:   3'- -CCUGGUCUag---GUCCUGGUCCUG-GUCU- -5'
3795 5' -56.4 NC_001650.1 + 130013 0.73 0.580275
Target:  5'- gGGACgAGG-CCGcGGGCCucaAGGGCCAGAu -3'
miRNA:   3'- -CCUGgUCUaGGU-CCUGG---UCCUGGUCU- -5'
3795 5' -56.4 NC_001650.1 + 108596 0.73 0.590227
Target:  5'- cGGGCCAG-UCCAGGGacgugCAGGGCCu-- -3'
miRNA:   3'- -CCUGGUCuAGGUCCUg----GUCCUGGucu -5'
3795 5' -56.4 NC_001650.1 + 140000 0.72 0.639287
Target:  5'- aGGCCAGGggUCCAGGAagcaggaagcaaaCCAGGGguCCAGGa -3'
miRNA:   3'- cCUGGUCU--AGGUCCU-------------GGUCCU--GGUCU- -5'
3795 5' -56.4 NC_001650.1 + 133087 0.72 0.650314
Target:  5'- cGGCCGGcggcgagCCAGGugCAGGGCCcaagGGAg -3'
miRNA:   3'- cCUGGUCua-----GGUCCugGUCCUGG----UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.