miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3796 3' -57.1 NC_001650.1 + 19801 0.66 0.889121
Target:  5'- -------cUCUGguagagcaCGCCCCGCGCCUg -3'
miRNA:   3'- uacaugaaAGACac------GCGGGGCGCGGA- -5'
3796 3' -57.1 NC_001650.1 + 20072 0.66 0.882251
Target:  5'- aAUGUACaagUUUGacccgGgGCCCCGCgGCCa -3'
miRNA:   3'- -UACAUGaa-AGACa----CgCGGGGCG-CGGa -5'
3796 3' -57.1 NC_001650.1 + 76346 0.66 0.875161
Target:  5'- -gGUGCUcuugaggUCggcGUGCGCCCCcuCGCCc -3'
miRNA:   3'- uaCAUGAa------AGa--CACGCGGGGc-GCGGa -5'
3796 3' -57.1 NC_001650.1 + 28746 0.66 0.872992
Target:  5'- gAUGgAgUUUCUGUGCGCCUUcggggucuuugacgGUGCCg -3'
miRNA:   3'- -UACaUgAAAGACACGCGGGG--------------CGCGGa -5'
3796 3' -57.1 NC_001650.1 + 110223 0.66 0.860339
Target:  5'- cAUGUACUcgUCUaugaGCGCCCUGUGgCUg -3'
miRNA:   3'- -UACAUGAa-AGAca--CGCGGGGCGCgGA- -5'
3796 3' -57.1 NC_001650.1 + 137840 0.66 0.852618
Target:  5'- ---gGCgcaUCUG-GUGCCCCGCgGCCg -3'
miRNA:   3'- uacaUGaa-AGACaCGCGGGGCG-CGGa -5'
3796 3' -57.1 NC_001650.1 + 35793 0.66 0.852618
Target:  5'- -gGUACUc---GUGCGCggcggccguCCCGCGCCa -3'
miRNA:   3'- uaCAUGAaagaCACGCG---------GGGCGCGGa -5'
3796 3' -57.1 NC_001650.1 + 129939 0.67 0.843897
Target:  5'- cGUGUACgaggCUGUGgcgggcaCGCCCCuggagGCGCCc -3'
miRNA:   3'- -UACAUGaaa-GACAC-------GCGGGG-----CGCGGa -5'
3796 3' -57.1 NC_001650.1 + 57249 0.7 0.64678
Target:  5'- uUGgggcgGCUguugCUGcUGCGCCCCGCauGCCUc -3'
miRNA:   3'- uACa----UGAaa--GAC-ACGCGGGGCG--CGGA- -5'
3796 3' -57.1 NC_001650.1 + 72275 0.73 0.487231
Target:  5'- ---cGCgucCUGgaUGCGCCCCGCGCCg -3'
miRNA:   3'- uacaUGaaaGAC--ACGCGGGGCGCGGa -5'
3796 3' -57.1 NC_001650.1 + 29797 1.06 0.003541
Target:  5'- gAUGUACUUUCUGUGCGCCCCGCGCCUg -3'
miRNA:   3'- -UACAUGAAAGACACGCGGGGCGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.