miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3796 5' -50.7 NC_001650.1 + 72335 0.66 0.992718
Target:  5'- gUAGGGCUuguuGGGCUCCAGGcaugacaugauGGGUUUg- -3'
miRNA:   3'- aAUCUCGG----CCCGAGGUUU-----------UUCAGAaa -5'
3796 5' -50.7 NC_001650.1 + 13181 0.66 0.992718
Target:  5'- -gGGAGCCGGGa---GGAGAGUCc-- -3'
miRNA:   3'- aaUCUCGGCCCgaggUUUUUCAGaaa -5'
3796 5' -50.7 NC_001650.1 + 179888 0.66 0.992718
Target:  5'- -gGGAGCCGGGa---GGAGAGUCc-- -3'
miRNA:   3'- aaUCUCGGCCCgaggUUUUUCAGaaa -5'
3796 5' -50.7 NC_001650.1 + 66893 0.66 0.991601
Target:  5'- --cGAGCCGGGggCCGGGGAG-Ca-- -3'
miRNA:   3'- aauCUCGGCCCgaGGUUUUUCaGaaa -5'
3796 5' -50.7 NC_001650.1 + 74562 0.66 0.991601
Target:  5'- cUAGAGUccaaCGGGUUCgAGAuuGUCUUUc -3'
miRNA:   3'- aAUCUCG----GCCCGAGgUUUuuCAGAAA- -5'
3796 5' -50.7 NC_001650.1 + 12805 0.66 0.990354
Target:  5'- -cGGAGCCccauggcuggcaGGGUggUCCuAGAGGGUCUUUa -3'
miRNA:   3'- aaUCUCGG------------CCCG--AGG-UUUUUCAGAAA- -5'
3796 5' -50.7 NC_001650.1 + 179512 0.66 0.990354
Target:  5'- -cGGAGCCccauggcuggcaGGGUggUCCuAGAGGGUCUUUa -3'
miRNA:   3'- aaUCUCGG------------CCCG--AGG-UUUUUCAGAAA- -5'
3796 5' -50.7 NC_001650.1 + 41859 0.67 0.987427
Target:  5'- cUGGAGaCCa-GCUCCAGGAAGUCc-- -3'
miRNA:   3'- aAUCUC-GGccCGAGGUUUUUCAGaaa -5'
3796 5' -50.7 NC_001650.1 + 145518 0.67 0.983858
Target:  5'- cUGGAGCUucagGGGCUCCAcguGGUUg-- -3'
miRNA:   3'- aAUCUCGG----CCCGAGGUuuuUCAGaaa -5'
3796 5' -50.7 NC_001650.1 + 34472 0.67 0.983858
Target:  5'- -aGGAGCCGGGCgcgcacCCGGu--GUCa-- -3'
miRNA:   3'- aaUCUCGGCCCGa-----GGUUuuuCAGaaa -5'
3796 5' -50.7 NC_001650.1 + 151741 0.67 0.981809
Target:  5'- -gAGGGUCGGGCUCgGGuccuGGUCc-- -3'
miRNA:   3'- aaUCUCGGCCCGAGgUUuu--UCAGaaa -5'
3796 5' -50.7 NC_001650.1 + 171373 0.68 0.974488
Target:  5'- -gGGGGUCuuugGGGgUCCGGGGGGUCUUa -3'
miRNA:   3'- aaUCUCGG----CCCgAGGUUUUUCAGAAa -5'
3796 5' -50.7 NC_001650.1 + 4666 0.68 0.974488
Target:  5'- -gGGGGUCuuugGGGgUCCGGGGGGUCUUa -3'
miRNA:   3'- aaUCUCGG----CCCgAGGUUUUUCAGAAa -5'
3796 5' -50.7 NC_001650.1 + 142788 0.68 0.971627
Target:  5'- -cGGcGGCCGGGC-CCAGAcggGGGUCa-- -3'
miRNA:   3'- aaUC-UCGGCCCGaGGUUU---UUCAGaaa -5'
3796 5' -50.7 NC_001650.1 + 121590 0.68 0.971627
Target:  5'- -cGGGGCUGGGCUCCcgccuGUgUUUg -3'
miRNA:   3'- aaUCUCGGCCCGAGGuuuuuCAgAAA- -5'
3796 5' -50.7 NC_001650.1 + 106859 0.68 0.968542
Target:  5'- cUGGGGUCGGGC-CCGGGguggaugacAGGUCUa- -3'
miRNA:   3'- aAUCUCGGCCCGaGGUUU---------UUCAGAaa -5'
3796 5' -50.7 NC_001650.1 + 145495 0.69 0.961673
Target:  5'- -aAGGGCCggGGGCUCCu---GGUCa-- -3'
miRNA:   3'- aaUCUCGG--CCCGAGGuuuuUCAGaaa -5'
3796 5' -50.7 NC_001650.1 + 59795 0.69 0.957875
Target:  5'- -cAGAGuCCGGGUguUCCGAgucgggauaGAAGUCUUc -3'
miRNA:   3'- aaUCUC-GGCCCG--AGGUU---------UUUCAGAAa -5'
3796 5' -50.7 NC_001650.1 + 119941 0.69 0.957482
Target:  5'- -aGGuGCCccgGGGCUCCugcggguGGAAGGUCUUUg -3'
miRNA:   3'- aaUCuCGG---CCCGAGG-------UUUUUCAGAAA- -5'
3796 5' -50.7 NC_001650.1 + 35297 0.7 0.935054
Target:  5'- -gGGAGaCGGGCUCCAGu--GUCa-- -3'
miRNA:   3'- aaUCUCgGCCCGAGGUUuuuCAGaaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.