miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3797 3' -59.3 NC_001650.1 + 62159 0.66 0.849921
Target:  5'- gGGGCGCCUgaugUGGGCcagccccgccgCGUCCUCg -3'
miRNA:   3'- -CCUGCGGG----ACCCGuacua------GCGGGAGg -5'
3797 3' -59.3 NC_001650.1 + 25949 0.66 0.849161
Target:  5'- -cAUGcCCCUGGGCAUcca-GgCCUCCa -3'
miRNA:   3'- ccUGC-GGGACCCGUAcuagCgGGAGG- -5'
3797 3' -59.3 NC_001650.1 + 85734 0.66 0.849161
Target:  5'- cGAgGCgCCUGaGGCugGGUCGUCgUCCa -3'
miRNA:   3'- cCUgCG-GGAC-CCGuaCUAGCGGgAGG- -5'
3797 3' -59.3 NC_001650.1 + 109282 0.66 0.849161
Target:  5'- gGGGCGCCCc--GCuc-GUCGCCCUggCCa -3'
miRNA:   3'- -CCUGCGGGaccCGuacUAGCGGGA--GG- -5'
3797 3' -59.3 NC_001650.1 + 60600 0.66 0.849161
Target:  5'- --cCGCCCgaaaaagucugGGGCGUaGG-CGCCCUgCCg -3'
miRNA:   3'- ccuGCGGGa----------CCCGUA-CUaGCGGGA-GG- -5'
3797 3' -59.3 NC_001650.1 + 132549 0.66 0.849161
Target:  5'- -cGCGCCCcccGGGCGacg-CGCCC-CCg -3'
miRNA:   3'- ccUGCGGGa--CCCGUacuaGCGGGaGG- -5'
3797 3' -59.3 NC_001650.1 + 123709 0.66 0.849161
Target:  5'- uGGGC-UgCUGGGgGUGGaCGCCC-CCg -3'
miRNA:   3'- -CCUGcGgGACCCgUACUaGCGGGaGG- -5'
3797 3' -59.3 NC_001650.1 + 72603 0.66 0.841463
Target:  5'- uGGCGCCCacggUGGaCAUGAUCcGCacgcuggccaCCUCCu -3'
miRNA:   3'- cCUGCGGG----ACCcGUACUAG-CG----------GGAGG- -5'
3797 3' -59.3 NC_001650.1 + 75328 0.66 0.841463
Target:  5'- uGGACGCa---GGCgGUGAggcgcgCGUCCUCCa -3'
miRNA:   3'- -CCUGCGggacCCG-UACUa-----GCGGGAGG- -5'
3797 3' -59.3 NC_001650.1 + 134427 0.66 0.841463
Target:  5'- aGGAgGCCCUGGac--GAggaGCCCgUCCg -3'
miRNA:   3'- -CCUgCGGGACCcguaCUag-CGGG-AGG- -5'
3797 3' -59.3 NC_001650.1 + 52310 0.66 0.841463
Target:  5'- aGGAagccCGCCCU-GGCccGccCGUCCUCCu -3'
miRNA:   3'- -CCU----GCGGGAcCCGuaCuaGCGGGAGG- -5'
3797 3' -59.3 NC_001650.1 + 601 0.66 0.841463
Target:  5'- gGGGCGaggCC-GGGC-UGc-CGCCCUCCc -3'
miRNA:   3'- -CCUGCg--GGaCCCGuACuaGCGGGAGG- -5'
3797 3' -59.3 NC_001650.1 + 144277 0.66 0.841463
Target:  5'- -aACGgCCUcuGCAUGuUCGCCCUCUu -3'
miRNA:   3'- ccUGCgGGAccCGUACuAGCGGGAGG- -5'
3797 3' -59.3 NC_001650.1 + 114909 0.66 0.841463
Target:  5'- gGGAgGU----GGCcgGGUUGCCCUCCa -3'
miRNA:   3'- -CCUgCGggacCCGuaCUAGCGGGAGG- -5'
3797 3' -59.3 NC_001650.1 + 167308 0.66 0.841463
Target:  5'- gGGGCGaggCC-GGGC-UGc-CGCCCUCCc -3'
miRNA:   3'- -CCUGCg--GGaCCCGuACuaGCGGGAGG- -5'
3797 3' -59.3 NC_001650.1 + 54535 0.66 0.83912
Target:  5'- uGGACagcuGCCCcGGGag-GGUCgaggacaggguggaGCCCUCCc -3'
miRNA:   3'- -CCUG----CGGGaCCCguaCUAG--------------CGGGAGG- -5'
3797 3' -59.3 NC_001650.1 + 56370 0.66 0.833591
Target:  5'- aGGcgcuCGCCCacGGGCGaaccgGGcCGCCCUCg -3'
miRNA:   3'- -CCu---GCGGGa-CCCGUa----CUaGCGGGAGg -5'
3797 3' -59.3 NC_001650.1 + 129133 0.66 0.833591
Target:  5'- -cGCGCCCgGGGCcgaggacacgGGggcggcccucuUCGCCCUCUc -3'
miRNA:   3'- ccUGCGGGaCCCGua--------CU-----------AGCGGGAGG- -5'
3797 3' -59.3 NC_001650.1 + 134317 0.66 0.825551
Target:  5'- cGGaACGgCCaGGGCGgccaGGUCGCCacgCCu -3'
miRNA:   3'- -CC-UGCgGGaCCCGUa---CUAGCGGga-GG- -5'
3797 3' -59.3 NC_001650.1 + 52786 0.66 0.825551
Target:  5'- aGGACGCCCUGcaCGUGGgcCGCUaugUCCc -3'
miRNA:   3'- -CCUGCGGGACccGUACUa-GCGGg--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.