miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3797 5' -56.2 NC_001650.1 + 133894 0.66 0.925518
Target:  5'- gGAGGccGGGGCCgggaGGGACgaGGcgcGCUUUGg -3'
miRNA:   3'- -CUCC--UCCCGGg---UCCUGa-CCu--UGAAAC- -5'
3797 5' -56.2 NC_001650.1 + 112082 0.66 0.925518
Target:  5'- aAGGGGGGCagCAGG-CUGGggUc--- -3'
miRNA:   3'- cUCCUCCCGg-GUCCuGACCuuGaaac -5'
3797 5' -56.2 NC_001650.1 + 83016 0.66 0.920038
Target:  5'- cGAGcAGGcGCUC-GGugUGGAACUUUa -3'
miRNA:   3'- -CUCcUCC-CGGGuCCugACCUUGAAAc -5'
3797 5' -56.2 NC_001650.1 + 133302 0.66 0.920038
Target:  5'- gGAGGGGGcuGCCCAGGaggcgccggGCgagGGGACg--- -3'
miRNA:   3'- -CUCCUCC--CGGGUCC---------UGa--CCUUGaaac -5'
3797 5' -56.2 NC_001650.1 + 106860 0.66 0.920038
Target:  5'- uGGGGucGGGCCCGGGG-UGGAugACa--- -3'
miRNA:   3'- -CUCCu-CCCGGGUCCUgACCU--UGaaac -5'
3797 5' -56.2 NC_001650.1 + 30761 0.66 0.914322
Target:  5'- uGAGGAGGaGCCgAGaGACgggcaggGGGACg--- -3'
miRNA:   3'- -CUCCUCC-CGGgUC-CUGa------CCUUGaaac -5'
3797 5' -56.2 NC_001650.1 + 49134 0.66 0.914322
Target:  5'- uGAGGcuacccAGGGUCCAGGgaaaGCUGGAGg---- -3'
miRNA:   3'- -CUCC------UCCCGGGUCC----UGACCUUgaaac -5'
3797 5' -56.2 NC_001650.1 + 24942 0.66 0.91018
Target:  5'- cGGGGGuccugcugcccugcuGGGCCCAGGGCacccaccUGGggUUcgGg -3'
miRNA:   3'- -CUCCU---------------CCCGGGUCCUG-------ACCuuGAaaC- -5'
3797 5' -56.2 NC_001650.1 + 87388 0.66 0.90837
Target:  5'- gGGGGAcaGGCCaCGGGACUGGc-CUUUa -3'
miRNA:   3'- -CUCCUc-CCGG-GUCCUGACCuuGAAAc -5'
3797 5' -56.2 NC_001650.1 + 119707 0.66 0.90837
Target:  5'- ---aGGGGCCCcacGGGGCUcaGGAACUUg- -3'
miRNA:   3'- cuccUCCCGGG---UCCUGA--CCUUGAAac -5'
3797 5' -56.2 NC_001650.1 + 155052 0.66 0.907151
Target:  5'- cGAGGGGucgcagagcaGGCCCAGGugccugccguccCUGGAGCa--- -3'
miRNA:   3'- -CUCCUC----------CCGGGUCCu-----------GACCUUGaaac -5'
3797 5' -56.2 NC_001650.1 + 105486 0.66 0.902184
Target:  5'- cGGuGAGGGUUaCAGGugUGGGACa--- -3'
miRNA:   3'- cUC-CUCCCGG-GUCCugACCUUGaaac -5'
3797 5' -56.2 NC_001650.1 + 28196 0.66 0.902184
Target:  5'- -cGGuGGaGCCCAGGACgggcgaGGGGCa--- -3'
miRNA:   3'- cuCCuCC-CGGGUCCUGa-----CCUUGaaac -5'
3797 5' -56.2 NC_001650.1 + 77227 0.66 0.895767
Target:  5'- -uGGAcGGGUCCAcGGACUGG-GCUc-- -3'
miRNA:   3'- cuCCU-CCCGGGU-CCUGACCuUGAaac -5'
3797 5' -56.2 NC_001650.1 + 128858 0.66 0.895767
Target:  5'- aAGGAGaGGCUCAGGgaGCUGGccuccuccgagGACUUUc -3'
miRNA:   3'- cUCCUC-CCGGGUCC--UGACC-----------UUGAAAc -5'
3797 5' -56.2 NC_001650.1 + 71 0.66 0.895767
Target:  5'- cGAGGAgagGGGCCCGGGAaaccccccCUcGGGGCc--- -3'
miRNA:   3'- -CUCCU---CCCGGGUCCU--------GA-CCUUGaaac -5'
3797 5' -56.2 NC_001650.1 + 166778 0.66 0.895767
Target:  5'- cGAGGAgagGGGCCCGGGAaaccccccCUcGGGGCc--- -3'
miRNA:   3'- -CUCCU---CCCGGGUCCU--------GA-CCUUGaaac -5'
3797 5' -56.2 NC_001650.1 + 35282 0.67 0.882251
Target:  5'- cGGGGcGGGCCgGGGACgGGcGCg--- -3'
miRNA:   3'- -CUCCuCCCGGgUCCUGaCCuUGaaac -5'
3797 5' -56.2 NC_001650.1 + 49891 0.67 0.875161
Target:  5'- -cGGAGGGCCCcggGGGGCgccgGGGGg---- -3'
miRNA:   3'- cuCCUCCCGGG---UCCUGa---CCUUgaaac -5'
3797 5' -56.2 NC_001650.1 + 102149 0.67 0.875161
Target:  5'- aGAGGAagcaccaacaGGUCCAGGACgGGAACg--- -3'
miRNA:   3'- -CUCCUc---------CCGGGUCCUGaCCUUGaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.