miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3798 3' -58.5 NC_001650.1 + 74735 0.65 0.881036
Target:  5'- uCCGGCGaCC-CCGGGUggcacacgaagaGCCUGAGcAGCc -3'
miRNA:   3'- -GGUUGC-GGaGGCUCGa-----------CGGGCUC-UCG- -5'
3798 3' -58.5 NC_001650.1 + 181155 0.65 0.880356
Target:  5'- gCCAAUgggagGCCUCCGggcccggcgacgucAGCUGUugCCaGGGGGCu -3'
miRNA:   3'- -GGUUG-----CGGAGGC--------------UCGACG--GG-CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 14448 0.65 0.880356
Target:  5'- gCCAAUgggagGCCUCCGggcccggcgacgucAGCUGUugCCaGGGGGCu -3'
miRNA:   3'- -GGUUG-----CGGAGGC--------------UCGACG--GG-CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 50739 0.66 0.875538
Target:  5'- gCCcGCGCUUUCGcuCUcGUCCGAGaAGCg -3'
miRNA:   3'- -GGuUGCGGAGGCucGA-CGGGCUC-UCG- -5'
3798 3' -58.5 NC_001650.1 + 74859 0.66 0.875538
Target:  5'- cCCGucCGCgUCCGGGagGCCCGGGcagaucuccAGCa -3'
miRNA:   3'- -GGUu-GCGgAGGCUCgaCGGGCUC---------UCG- -5'
3798 3' -58.5 NC_001650.1 + 37700 0.66 0.875538
Target:  5'- aCUAAgGCUcaaCCGGG-UGCCCGuGGGCc -3'
miRNA:   3'- -GGUUgCGGa--GGCUCgACGGGCuCUCG- -5'
3798 3' -58.5 NC_001650.1 + 160895 0.66 0.875538
Target:  5'- cCCcACGCCgcacugCUGcGCgacccUGCCCGAGGcGCa -3'
miRNA:   3'- -GGuUGCGGa-----GGCuCG-----ACGGGCUCU-CG- -5'
3798 3' -58.5 NC_001650.1 + 22626 0.66 0.875538
Target:  5'- uUCAGCGCC-CCcAGC-GCgCgGGGGGCg -3'
miRNA:   3'- -GGUUGCGGaGGcUCGaCG-GgCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 117363 0.66 0.875538
Target:  5'- cUCAGCuCCUCCcacAGCUGCCUcucgauaaacaGGGAGUc -3'
miRNA:   3'- -GGUUGcGGAGGc--UCGACGGG-----------CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 104922 0.66 0.875538
Target:  5'- aCCAuaGCCUCCuuuGCgGCCUGGGucAGCa -3'
miRNA:   3'- -GGUugCGGAGGcu-CGaCGGGCUC--UCG- -5'
3798 3' -58.5 NC_001650.1 + 111077 0.66 0.875538
Target:  5'- cCCAGgGgCUCCagcGGCgccagGCgCGAGGGCg -3'
miRNA:   3'- -GGUUgCgGAGGc--UCGa----CGgGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 19559 0.66 0.875538
Target:  5'- -gAGCGCCgcggucccaCCGGGa-GCCCGGGuGCc -3'
miRNA:   3'- ggUUGCGGa--------GGCUCgaCGGGCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 69160 0.66 0.871329
Target:  5'- gCgAGCGCCUCCaGGUccgGCCaguccgccacgaagGAGAGCa -3'
miRNA:   3'- -GgUUGCGGAGGcUCGa--CGGg-------------CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 92710 0.66 0.871329
Target:  5'- aCAGCGCCcucuuguagaggugCacgaaGAGCUGCCuCGAGAa- -3'
miRNA:   3'- gGUUGCGGa-------------Gg----CUCGACGG-GCUCUcg -5'
3798 3' -58.5 NC_001650.1 + 156775 0.66 0.868484
Target:  5'- gCCAGguacaGCa-CCGAGUUGCCCGAaaacagcugcGAGUg -3'
miRNA:   3'- -GGUUg----CGgaGGCUCGACGGGCU----------CUCG- -5'
3798 3' -58.5 NC_001650.1 + 60885 0.66 0.868484
Target:  5'- gCCAGCaCCUCC-AGgaGcCCCGucauGAGCu -3'
miRNA:   3'- -GGUUGcGGAGGcUCgaC-GGGCu---CUCG- -5'
3798 3' -58.5 NC_001650.1 + 156435 0.66 0.868484
Target:  5'- cCCGG-GCCgugcagCuCGGGCgugaGCCUGGGGGCa -3'
miRNA:   3'- -GGUUgCGGa-----G-GCUCGa---CGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 175272 0.66 0.861232
Target:  5'- cCCAGC-CCUgCGGGgUGCCgGGGuuaGGCc -3'
miRNA:   3'- -GGUUGcGGAgGCUCgACGGgCUC---UCG- -5'
3798 3' -58.5 NC_001650.1 + 9438 0.66 0.861232
Target:  5'- aCAugGCCUCUGguuaauuaGGCggggGCCaaugGGGGGCc -3'
miRNA:   3'- gGUugCGGAGGC--------UCGa---CGGg---CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 83773 0.66 0.861232
Target:  5'- cCCGgguacGCGCCgUCCGGGg-GCCCcuggGAGGGUc -3'
miRNA:   3'- -GGU-----UGCGG-AGGCUCgaCGGG----CUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.