miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3798 3' -58.5 NC_001650.1 + 60885 0.66 0.868484
Target:  5'- gCCAGCaCCUCC-AGgaGcCCCGucauGAGCu -3'
miRNA:   3'- -GGUUGcGGAGGcUCgaC-GGGCu---CUCG- -5'
3798 3' -58.5 NC_001650.1 + 74859 0.66 0.875538
Target:  5'- cCCGucCGCgUCCGGGagGCCCGGGcagaucuccAGCa -3'
miRNA:   3'- -GGUu-GCGgAGGCUCgaCGGGCUC---------UCG- -5'
3798 3' -58.5 NC_001650.1 + 83773 0.66 0.861232
Target:  5'- cCCGgguacGCGCCgUCCGGGg-GCCCcuggGAGGGUc -3'
miRNA:   3'- -GGU-----UGCGG-AGGCUCgaCGGG----CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 8565 0.66 0.861232
Target:  5'- cCCAGC-CCUgCGGGgUGCCgGGGuuaGGCc -3'
miRNA:   3'- -GGUUGcGGAgGCUCgACGGgCUC---UCG- -5'
3798 3' -58.5 NC_001650.1 + 51621 0.66 0.854541
Target:  5'- gCCAGCGCCUCCgcgggccaguucuuGuucuccucgaucgccAGCUcCaCCGGGGGCg -3'
miRNA:   3'- -GGUUGCGGAGG--------------C---------------UCGAcG-GGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 79399 0.66 0.846159
Target:  5'- cCCGucGCGCCcCCGGGCggcGCcCCGuGGGa -3'
miRNA:   3'- -GGU--UGCGGaGGCUCGa--CG-GGCuCUCg -5'
3798 3' -58.5 NC_001650.1 + 122236 0.66 0.853789
Target:  5'- cCCGAgGCCgggggCGAGgUGCCCcacGAGCu -3'
miRNA:   3'- -GGUUgCGGag---GCUCgACGGGcu-CUCG- -5'
3798 3' -58.5 NC_001650.1 + 18581 0.66 0.853789
Target:  5'- -aAGCGgCUUuuuaccccauUGAGCUGCCCGcGGGUa -3'
miRNA:   3'- ggUUGCgGAG----------GCUCGACGGGCuCUCG- -5'
3798 3' -58.5 NC_001650.1 + 129245 0.66 0.861232
Target:  5'- uCCGACGCCcacUCCcuGGUgGCCCGcuccgccgccaAGGGCg -3'
miRNA:   3'- -GGUUGCGG---AGGc-UCGaCGGGC-----------UCUCG- -5'
3798 3' -58.5 NC_001650.1 + 134206 0.66 0.861232
Target:  5'- aCCAcacACGCCUCCcccGCggGCa-GAGAGCc -3'
miRNA:   3'- -GGU---UGCGGAGGcu-CGa-CGggCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 77792 0.66 0.853789
Target:  5'- cUCGAgGCCgcugCCgGAGCUGCUgGAcGGCc -3'
miRNA:   3'- -GGUUgCGGa---GG-CUCGACGGgCUcUCG- -5'
3798 3' -58.5 NC_001650.1 + 109563 0.66 0.861232
Target:  5'- uCCAAgucCGCCUaCUGGGaggggaacGCCCGGGAGg -3'
miRNA:   3'- -GGUU---GCGGA-GGCUCga------CGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 78631 0.66 0.861232
Target:  5'- gCAGacuaGCC-CaCGugguGCUGCCCGAG-GCg -3'
miRNA:   3'- gGUUg---CGGaG-GCu---CGACGGGCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 76976 0.67 0.838348
Target:  5'- cCCGAgGCCUCCGuGUUGUUgGuGuaGGCg -3'
miRNA:   3'- -GGUUgCGGAGGCuCGACGGgCuC--UCG- -5'
3798 3' -58.5 NC_001650.1 + 124099 0.67 0.830364
Target:  5'- gCCGACGggggCgGAGCgUGCauCCGAGAGCu -3'
miRNA:   3'- -GGUUGCgga-GgCUCG-ACG--GGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 66875 0.67 0.823035
Target:  5'- -aGGCGCCgggggcgggggcgagCCGGGg-GCCgGGGAGCa -3'
miRNA:   3'- ggUUGCGGa--------------GGCUCgaCGGgCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 82414 0.67 0.822212
Target:  5'- uUAGCGCCUgCUGcGGCUGCU-GAGAGg -3'
miRNA:   3'- gGUUGCGGA-GGC-UCGACGGgCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 87737 0.67 0.805434
Target:  5'- gCCAGCacccguccCCUCUG-GCUGCCa-GGAGCa -3'
miRNA:   3'- -GGUUGc-------GGAGGCuCGACGGgcUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 73162 0.67 0.828747
Target:  5'- uCCAGgGCCUCCaccucggucuuugugGGGCUGCCCuccgucaccaggaagGAG-GUg -3'
miRNA:   3'- -GGUUgCGGAGG---------------CUCGACGGG---------------CUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 27342 0.67 0.822212
Target:  5'- uCCAGgaGgCUCuCGAGCUGgccgaugccCCCGAGAGg -3'
miRNA:   3'- -GGUUg-CgGAG-GCUCGAC---------GGGCUCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.