miRNA display CGI


Results 61 - 80 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3798 3' -58.5 NC_001650.1 + 34667 0.67 0.822212
Target:  5'- aCCAGCGCCUacagCGAGa----CGGGAGCg -3'
miRNA:   3'- -GGUUGCGGAg---GCUCgacggGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 124243 0.68 0.788072
Target:  5'- cCCAGacCGCC-CUGcGGCUGaCCCuGGAGCg -3'
miRNA:   3'- -GGUU--GCGGaGGC-UCGAC-GGGcUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 131506 0.68 0.77019
Target:  5'- aCCGugGCCcccuggaccgucUCCccgcuGCgGCCCGAGAGg -3'
miRNA:   3'- -GGUugCGG------------AGGcu---CGaCGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 112945 0.68 0.75185
Target:  5'- aCCAcccACGCCUCCacGGGCUGgUacaGGGGGUu -3'
miRNA:   3'- -GGU---UGCGGAGG--CUCGACgGg--CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 47606 0.68 0.779192
Target:  5'- cCCGACGCCcCCGGGCgguggGCUgGGuuugucuucGGGCc -3'
miRNA:   3'- -GGUUGCGGaGGCUCGa----CGGgCU---------CUCG- -5'
3798 3' -58.5 NC_001650.1 + 157557 0.68 0.75185
Target:  5'- aCAGCGCCUCCuguGGCaGCuuGgAGAGg -3'
miRNA:   3'- gGUUGCGGAGGc--UCGaCGggC-UCUCg -5'
3798 3' -58.5 NC_001650.1 + 58964 0.68 0.788072
Target:  5'- gCGGCgGCUUCUG-GCacggGCCCGGGAGg -3'
miRNA:   3'- gGUUG-CGGAGGCuCGa---CGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 127515 0.68 0.742529
Target:  5'- -uGGCGCCcUCGAGCggcagcggGCCgCGAGuGCa -3'
miRNA:   3'- ggUUGCGGaGGCUCGa-------CGG-GCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 112800 0.68 0.77019
Target:  5'- cCCGugGgCCUCCauGC-GCUCGGGGGCc -3'
miRNA:   3'- -GGUugC-GGAGGcuCGaCGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 119531 0.68 0.77019
Target:  5'- cCCGGgGUUUcaCCGGGUcGCCCGAGGGg -3'
miRNA:   3'- -GGUUgCGGA--GGCUCGaCGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 75720 0.68 0.761073
Target:  5'- gCCAGCGUgUUgGGGCUcgucgGgCCGGGAGUg -3'
miRNA:   3'- -GGUUGCGgAGgCUCGA-----CgGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 71030 0.68 0.761073
Target:  5'- -gAACGCCaUCuCGAGCgcggcggGCCUGGGccAGCa -3'
miRNA:   3'- ggUUGCGG-AG-GCUCGa------CGGGCUC--UCG- -5'
3798 3' -58.5 NC_001650.1 + 107718 0.68 0.75185
Target:  5'- gCGACGCCUCCaGGGCccaggaauuccUGUUCcAGGGCa -3'
miRNA:   3'- gGUUGCGGAGG-CUCG-----------ACGGGcUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 48039 0.68 0.75185
Target:  5'- cCUGGCGCUguUCUGcucGCUGCUgGGGGGCg -3'
miRNA:   3'- -GGUUGCGG--AGGCu--CGACGGgCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 106098 0.68 0.788072
Target:  5'- cCCGugGUCUuuGGGC-GCUCGGGccuGGCc -3'
miRNA:   3'- -GGUugCGGAggCUCGaCGGGCUC---UCG- -5'
3798 3' -58.5 NC_001650.1 + 30394 0.68 0.75185
Target:  5'- aCAGCGUCUUCuauuGuCUGCCCgcaGAGGGCg -3'
miRNA:   3'- gGUUGCGGAGGcu--C-GACGGG---CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 129588 0.68 0.741592
Target:  5'- uCCAgaACGCCUUCGAcaacaugGC-GUUCGGGGGCa -3'
miRNA:   3'- -GGU--UGCGGAGGCU-------CGaCGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 26812 0.68 0.75185
Target:  5'- gCCGcGCGCCccUUCGAGUUGgCCGAccugGGGCa -3'
miRNA:   3'- -GGU-UGCGG--AGGCUCGACgGGCU----CUCG- -5'
3798 3' -58.5 NC_001650.1 + 156847 0.69 0.733118
Target:  5'- gUCAGgGCCUCCacccuCUGCUCGGGGGUc -3'
miRNA:   3'- -GGUUgCGGAGGcuc--GACGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 88223 0.69 0.733118
Target:  5'- gCGAgGCCUCCGc---GUUCGAGAGCg -3'
miRNA:   3'- gGUUgCGGAGGCucgaCGGGCUCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.