miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3798 3' -58.5 NC_001650.1 + 156847 0.69 0.733118
Target:  5'- gUCAGgGCCUCCacccuCUGCUCGGGGGUc -3'
miRNA:   3'- -GGUUgCGGAGGcuc--GACGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 55049 0.69 0.733118
Target:  5'- uCCAGCuugaccGCCUCCGAGaggGCgaaGAGGGCc -3'
miRNA:   3'- -GGUUG------CGGAGGCUCga-CGgg-CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 157641 0.69 0.733118
Target:  5'- ----gGCCUCCaccguGAGC--CCCGAGAGCa -3'
miRNA:   3'- gguugCGGAGG-----CUCGacGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 56002 0.69 0.704432
Target:  5'- aUCAGCGCCUCgaagGAGUUGCUCucccGGGCg -3'
miRNA:   3'- -GGUUGCGGAGg---CUCGACGGGcu--CUCG- -5'
3798 3' -58.5 NC_001650.1 + 105159 0.69 0.736893
Target:  5'- cCCGACGCCUcggCCGcuauccucuccagagGGCUcuCCCGGGAGg -3'
miRNA:   3'- -GGUUGCGGA---GGC---------------UCGAc-GGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 160992 0.69 0.704432
Target:  5'- cCCAGCaggaCCUcCCGGGC-GUCCGAGGGg -3'
miRNA:   3'- -GGUUGc---GGA-GGCUCGaCGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 124452 0.69 0.704432
Target:  5'- uCCAGCGUgUCCGuggggGGCgccucgccCCCGGGGGCc -3'
miRNA:   3'- -GGUUGCGgAGGC-----UCGac------GGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 67100 0.69 0.694745
Target:  5'- gCGACGUCUCCaAGCUGCCCcc--GCc -3'
miRNA:   3'- gGUUGCGGAGGcUCGACGGGcucuCG- -5'
3798 3' -58.5 NC_001650.1 + 26971 0.69 0.704432
Target:  5'- gCGACGCCUUUaAGgUGCCCcuguacgacgGGGAGCu -3'
miRNA:   3'- gGUUGCGGAGGcUCgACGGG----------CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 26061 0.69 0.733118
Target:  5'- aCAGCGgCggcCUGAGCgccgGCCUGAGGGa -3'
miRNA:   3'- gGUUGCgGa--GGCUCGa---CGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 88223 0.69 0.733118
Target:  5'- gCGAgGCCUCCGc---GUUCGAGAGCg -3'
miRNA:   3'- gGUUgCGGAGGCucgaCGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 66380 0.69 0.68501
Target:  5'- gCCAACguguGCCUgCccGCgUGCCUGAGGGCg -3'
miRNA:   3'- -GGUUG----CGGAgGcuCG-ACGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 71412 0.7 0.665426
Target:  5'- cCCGAgGCCcCCGAGCgcauggagGCCCacGGGCu -3'
miRNA:   3'- -GGUUgCGGaGGCUCGa-------CGGGcuCUCG- -5'
3798 3' -58.5 NC_001650.1 + 120111 0.7 0.659528
Target:  5'- uCCGACGCC-CUGaAGgUGCCCagcuugugggucugcGGGGGCa -3'
miRNA:   3'- -GGUUGCGGaGGC-UCgACGGG---------------CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 175557 0.7 0.675234
Target:  5'- cCCucgguguCGCCcccUCgCGGacGCUGCCUGGGAGCg -3'
miRNA:   3'- -GGuu-----GCGG---AG-GCU--CGACGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 78246 0.7 0.645742
Target:  5'- cCCGGCGUCgUCCGAGUacugggGCCgGuuGAGCa -3'
miRNA:   3'- -GGUUGCGG-AGGCUCGa-----CGGgCu-CUCG- -5'
3798 3' -58.5 NC_001650.1 + 51830 0.7 0.675234
Target:  5'- cCCGGCcagGCCgUCaaaGAGCUcGgCCGAGGGCg -3'
miRNA:   3'- -GGUUG---CGG-AGg--CUCGA-CgGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 52443 0.7 0.672295
Target:  5'- gCAGCGCCUucaagugguccaccUCGGGcCUGCuCCGGGGGa -3'
miRNA:   3'- gGUUGCGGA--------------GGCUC-GACG-GGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 27260 0.7 0.675234
Target:  5'- -uGugGCCaCgGAGCUGgCCGuGAGCu -3'
miRNA:   3'- ggUugCGGaGgCUCGACgGGCuCUCG- -5'
3798 3' -58.5 NC_001650.1 + 50916 0.7 0.629962
Target:  5'- cCCGGCGCCUCCuGGGCaGCCCccuccccuucucucgGcgcgGGGGCu -3'
miRNA:   3'- -GGUUGCGGAGG-CUCGaCGGG---------------C----UCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.