miRNA display CGI


Results 101 - 120 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3798 3' -58.5 NC_001650.1 + 8850 0.7 0.675234
Target:  5'- cCCucgguguCGCCcccUCgCGGacGCUGCCUGGGAGCg -3'
miRNA:   3'- -GGuu-----GCGG---AG-GCU--CGACGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 50916 0.7 0.629962
Target:  5'- cCCGGCGCCUCCuGGGCaGCCCccuccccuucucucgGcgcgGGGGCu -3'
miRNA:   3'- -GGUUGCGGAGG-CUCGaCGGG---------------C----UCUCG- -5'
3798 3' -58.5 NC_001650.1 + 78246 0.7 0.645742
Target:  5'- cCCGGCGUCgUCCGAGUacugggGCCgGuuGAGCa -3'
miRNA:   3'- -GGUUGCGG-AGGCUCGa-----CGGgCu-CUCG- -5'
3798 3' -58.5 NC_001650.1 + 52443 0.7 0.672295
Target:  5'- gCAGCGCCUucaagugguccaccUCGGGcCUGCuCCGGGGGa -3'
miRNA:   3'- gGUUGCGGA--------------GGCUC-GACG-GGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 48939 0.71 0.576899
Target:  5'- gUCAACaCCUCUGAGgUGCCCGu--GCa -3'
miRNA:   3'- -GGUUGcGGAGGCUCgACGGGCucuCG- -5'
3798 3' -58.5 NC_001650.1 + 22052 0.71 0.56716
Target:  5'- cCCAaggcggacGCGCUcgCCaAGCUGCCCGAGAuGUu -3'
miRNA:   3'- -GGU--------UGCGGa-GGcUCGACGGGCUCU-CG- -5'
3798 3' -58.5 NC_001650.1 + 59388 0.71 0.616158
Target:  5'- uUAACGCCaaCCGcgcGCUGCUgGAGGGCc -3'
miRNA:   3'- gGUUGCGGa-GGCu--CGACGGgCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 53203 0.71 0.60631
Target:  5'- cCCGgcucGCGUC-CCGGGCgGCCCGA-AGCg -3'
miRNA:   3'- -GGU----UGCGGaGGCUCGaCGGGCUcUCG- -5'
3798 3' -58.5 NC_001650.1 + 117360 0.71 0.586674
Target:  5'- cCCGGCGCCUCCcgcGGC-GCCCGccaAGCc -3'
miRNA:   3'- -GGUUGCGGAGGc--UCGaCGGGCuc-UCG- -5'
3798 3' -58.5 NC_001650.1 + 153801 0.71 0.616158
Target:  5'- gCCgAGCGCCUCCaGGGC-GCCCucugcGGGCa -3'
miRNA:   3'- -GG-UUGCGGAGG-CUCGaCGGGcu---CUCG- -5'
3798 3' -58.5 NC_001650.1 + 54261 0.71 0.59648
Target:  5'- gCCAcggGCGCCUCCagGGGCgUGCCCGccacAGCc -3'
miRNA:   3'- -GGU---UGCGGAGG--CUCG-ACGGGCuc--UCG- -5'
3798 3' -58.5 NC_001650.1 + 131028 0.71 0.586674
Target:  5'- -gGACGCgagCCGGGCUccgGuCCCGAGGGCc -3'
miRNA:   3'- ggUUGCGga-GGCUCGA---C-GGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 103756 0.71 0.586674
Target:  5'- gCGACgGCCUCCcccagGUCCGAGAGCg -3'
miRNA:   3'- gGUUG-CGGAGGcucgaCGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 105115 0.71 0.56716
Target:  5'- uCCuccCGCCcgCCGAGCggccgcGCCCG-GAGCc -3'
miRNA:   3'- -GGuu-GCGGa-GGCUCGa-----CGGGCuCUCG- -5'
3798 3' -58.5 NC_001650.1 + 30804 0.72 0.547815
Target:  5'- gCGGCGCUgCgCGuGCUGaCCGAGAGCu -3'
miRNA:   3'- gGUUGCGGaG-GCuCGACgGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 35592 0.73 0.463933
Target:  5'- uCCGGCGCgUgCGAGC-GCCUGGGGGa -3'
miRNA:   3'- -GGUUGCGgAgGCUCGaCGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 60646 0.73 0.491211
Target:  5'- gCCAcCGUCUCC-AGCUGCCUGGGguuggagaaGGCg -3'
miRNA:   3'- -GGUuGCGGAGGcUCGACGGGCUC---------UCG- -5'
3798 3' -58.5 NC_001650.1 + 81584 0.73 0.482034
Target:  5'- aCCAGgGCCUCgGGGUcGCCCGAcgcGAGg -3'
miRNA:   3'- -GGUUgCGGAGgCUCGaCGGGCU---CUCg -5'
3798 3' -58.5 NC_001650.1 + 127379 0.73 0.463933
Target:  5'- aCGACGUCcCCGAGCccgccaggaGcCCCGAGAGCc -3'
miRNA:   3'- gGUUGCGGaGGCUCGa--------C-GGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 130005 0.73 0.463933
Target:  5'- gCCGGgaGCCUguaacccugagcCUGGGCgGCCCGGGAGCu -3'
miRNA:   3'- -GGUUg-CGGA------------GGCUCGaCGGGCUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.