Results 21 - 40 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3798 | 3' | -58.5 | NC_001650.1 | + | 117360 | 0.71 | 0.586674 |
Target: 5'- cCCGGCGCCUCCcgcGGC-GCCCGccaAGCc -3' miRNA: 3'- -GGUUGCGGAGGc--UCGaCGGGCuc-UCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 153801 | 0.71 | 0.616158 |
Target: 5'- gCCgAGCGCCUCCaGGGC-GCCCucugcGGGCa -3' miRNA: 3'- -GG-UUGCGGAGG-CUCGaCGGGcu---CUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 54261 | 0.71 | 0.59648 |
Target: 5'- gCCAcggGCGCCUCCagGGGCgUGCCCGccacAGCc -3' miRNA: 3'- -GGU---UGCGGAGG--CUCG-ACGGGCuc--UCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 22052 | 0.71 | 0.56716 |
Target: 5'- cCCAaggcggacGCGCUcgCCaAGCUGCCCGAGAuGUu -3' miRNA: 3'- -GGU--------UGCGGa-GGcUCGACGGGCUCU-CG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 48939 | 0.71 | 0.576899 |
Target: 5'- gUCAACaCCUCUGAGgUGCCCGu--GCa -3' miRNA: 3'- -GGUUGcGGAGGCUCgACGGGCucuCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 53203 | 0.71 | 0.60631 |
Target: 5'- cCCGgcucGCGUC-CCGGGCgGCCCGA-AGCg -3' miRNA: 3'- -GGU----UGCGGaGGCUCGaCGGGCUcUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 59388 | 0.71 | 0.616158 |
Target: 5'- uUAACGCCaaCCGcgcGCUGCUgGAGGGCc -3' miRNA: 3'- gGUUGCGGa-GGCu--CGACGGgCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 131028 | 0.71 | 0.586674 |
Target: 5'- -gGACGCgagCCGGGCUccgGuCCCGAGGGCc -3' miRNA: 3'- ggUUGCGga-GGCUCGA---C-GGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 175557 | 0.7 | 0.675234 |
Target: 5'- cCCucgguguCGCCcccUCgCGGacGCUGCCUGGGAGCg -3' miRNA: 3'- -GGuu-----GCGG---AG-GCU--CGACGGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 71412 | 0.7 | 0.665426 |
Target: 5'- cCCGAgGCCcCCGAGCgcauggagGCCCacGGGCu -3' miRNA: 3'- -GGUUgCGGaGGCUCGa-------CGGGcuCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 102370 | 0.7 | 0.624045 |
Target: 5'- uCCAACGCCaugcugcagUCCGuGCUGCagcagcaggggGGGAGCg -3' miRNA: 3'- -GGUUGCGG---------AGGCuCGACGgg---------CUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 132908 | 0.7 | 0.635881 |
Target: 5'- -uGGCGCCcgcUCCGcgagacuacAGCcGCCCGAGGGUc -3' miRNA: 3'- ggUUGCGG---AGGC---------UCGaCGGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 93806 | 0.7 | 0.655592 |
Target: 5'- aUCGAC-CCUUCGuGgUGCCCaAGAGCa -3' miRNA: 3'- -GGUUGcGGAGGCuCgACGGGcUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 120111 | 0.7 | 0.659528 |
Target: 5'- uCCGACGCC-CUGaAGgUGCCCagcuugugggucugcGGGGGCa -3' miRNA: 3'- -GGUUGCGGaGGC-UCgACGGG---------------CUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 50916 | 0.7 | 0.629962 |
Target: 5'- cCCGGCGCCUCCuGGGCaGCCCccuccccuucucucgGcgcgGGGGCu -3' miRNA: 3'- -GGUUGCGGAGG-CUCGaCGGG---------------C----UCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 8850 | 0.7 | 0.675234 |
Target: 5'- cCCucgguguCGCCcccUCgCGGacGCUGCCUGGGAGCg -3' miRNA: 3'- -GGuu-----GCGG---AG-GCU--CGACGGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 27260 | 0.7 | 0.675234 |
Target: 5'- -uGugGCCaCgGAGCUGgCCGuGAGCu -3' miRNA: 3'- ggUugCGGaGgCUCGACgGGCuCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 52443 | 0.7 | 0.672295 |
Target: 5'- gCAGCGCCUucaagugguccaccUCGGGcCUGCuCCGGGGGa -3' miRNA: 3'- gGUUGCGGA--------------GGCUC-GACG-GGCUCUCg -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 51830 | 0.7 | 0.675234 |
Target: 5'- cCCGGCcagGCCgUCaaaGAGCUcGgCCGAGGGCg -3' miRNA: 3'- -GGUUG---CGG-AGg--CUCGA-CgGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 78246 | 0.7 | 0.645742 |
Target: 5'- cCCGGCGUCgUCCGAGUacugggGCCgGuuGAGCa -3' miRNA: 3'- -GGUUGCGG-AGGCUCGa-----CGGgCu-CUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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