Results 41 - 60 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
3798 | 3' | -58.5 | NC_001650.1 | + | 67100 | 0.69 | 0.694745 |
Target: 5'- gCGACGUCUCCaAGCUGCCCcc--GCc -3' miRNA: 3'- gGUUGCGGAGGcUCGACGGGcucuCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 56002 | 0.69 | 0.704432 |
Target: 5'- aUCAGCGCCUCgaagGAGUUGCUCucccGGGCg -3' miRNA: 3'- -GGUUGCGGAGg---CUCGACGGGcu--CUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 133395 | 0.69 | 0.714061 |
Target: 5'- cCCucgcGCGCCggggCCGcGgUGCCCGAGAa- -3' miRNA: 3'- -GGu---UGCGGa---GGCuCgACGGGCUCUcg -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 76853 | 0.69 | 0.714061 |
Target: 5'- -gGACGaCUCUGAGC-GCgUGAGGGCa -3' miRNA: 3'- ggUUGCgGAGGCUCGaCGgGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 124452 | 0.69 | 0.704432 |
Target: 5'- uCCAGCGUgUCCGuggggGGCgccucgccCCCGGGGGCc -3' miRNA: 3'- -GGUUGCGgAGGC-----UCGac------GGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 26971 | 0.69 | 0.704432 |
Target: 5'- gCGACGCCUUUaAGgUGCCCcuguacgacgGGGAGCu -3' miRNA: 3'- gGUUGCGGAGGcUCgACGGG----------CUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 26061 | 0.69 | 0.733118 |
Target: 5'- aCAGCGgCggcCUGAGCgccgGCCUGAGGGa -3' miRNA: 3'- gGUUGCgGa--GGCUCGa---CGGGCUCUCg -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 88223 | 0.69 | 0.733118 |
Target: 5'- gCGAgGCCUCCGc---GUUCGAGAGCg -3' miRNA: 3'- gGUUgCGGAGGCucgaCGGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 156847 | 0.69 | 0.733118 |
Target: 5'- gUCAGgGCCUCCacccuCUGCUCGGGGGUc -3' miRNA: 3'- -GGUUgCGGAGGcuc--GACGGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 66380 | 0.69 | 0.68501 |
Target: 5'- gCCAACguguGCCUgCccGCgUGCCUGAGGGCg -3' miRNA: 3'- -GGUUG----CGGAgGcuCG-ACGGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 105159 | 0.69 | 0.736893 |
Target: 5'- cCCGACGCCUcggCCGcuauccucuccagagGGCUcuCCCGGGAGg -3' miRNA: 3'- -GGUUGCGGA---GGC---------------UCGAc-GGGCUCUCg -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 55049 | 0.69 | 0.733118 |
Target: 5'- uCCAGCuugaccGCCUCCGAGaggGCgaaGAGGGCc -3' miRNA: 3'- -GGUUG------CGGAGGCUCga-CGgg-CUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 157641 | 0.69 | 0.733118 |
Target: 5'- ----gGCCUCCaccguGAGC--CCCGAGAGCa -3' miRNA: 3'- gguugCGGAGG-----CUCGacGGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 160992 | 0.69 | 0.704432 |
Target: 5'- cCCAGCaggaCCUcCCGGGC-GUCCGAGGGg -3' miRNA: 3'- -GGUUGc---GGA-GGCUCGaCGGGCUCUCg -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 119531 | 0.68 | 0.77019 |
Target: 5'- cCCGGgGUUUcaCCGGGUcGCCCGAGGGg -3' miRNA: 3'- -GGUUgCGGA--GGCUCGaCGGGCUCUCg -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 30394 | 0.68 | 0.75185 |
Target: 5'- aCAGCGUCUUCuauuGuCUGCCCgcaGAGGGCg -3' miRNA: 3'- gGUUGCGGAGGcu--C-GACGGG---CUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 26812 | 0.68 | 0.75185 |
Target: 5'- gCCGcGCGCCccUUCGAGUUGgCCGAccugGGGCa -3' miRNA: 3'- -GGU-UGCGG--AGGCUCGACgGGCU----CUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 129588 | 0.68 | 0.741592 |
Target: 5'- uCCAgaACGCCUUCGAcaacaugGC-GUUCGGGGGCa -3' miRNA: 3'- -GGU--UGCGGAGGCU-------CGaCGGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 106098 | 0.68 | 0.788072 |
Target: 5'- cCCGugGUCUuuGGGC-GCUCGGGccuGGCc -3' miRNA: 3'- -GGUugCGGAggCUCGaCGGGCUC---UCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 157557 | 0.68 | 0.75185 |
Target: 5'- aCAGCGCCUCCuguGGCaGCuuGgAGAGg -3' miRNA: 3'- gGUUGCGGAGGc--UCGaCGggC-UCUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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