Results 61 - 80 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
3798 | 3' | -58.5 | NC_001650.1 | + | 47606 | 0.68 | 0.779192 |
Target: 5'- cCCGACGCCcCCGGGCgguggGCUgGGuuugucuucGGGCc -3' miRNA: 3'- -GGUUGCGGaGGCUCGa----CGGgCU---------CUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 48039 | 0.68 | 0.75185 |
Target: 5'- cCUGGCGCUguUCUGcucGCUGCUgGGGGGCg -3' miRNA: 3'- -GGUUGCGG--AGGCu--CGACGGgCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 112800 | 0.68 | 0.77019 |
Target: 5'- cCCGugGgCCUCCauGC-GCUCGGGGGCc -3' miRNA: 3'- -GGUugC-GGAGGcuCGaCGGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 106098 | 0.68 | 0.788072 |
Target: 5'- cCCGugGUCUuuGGGC-GCUCGGGccuGGCc -3' miRNA: 3'- -GGUugCGGAggCUCGaCGGGCUC---UCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 58964 | 0.68 | 0.788072 |
Target: 5'- gCGGCgGCUUCUG-GCacggGCCCGGGAGg -3' miRNA: 3'- gGUUG-CGGAGGCuCGa---CGGGCUCUCg -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 119531 | 0.68 | 0.77019 |
Target: 5'- cCCGGgGUUUcaCCGGGUcGCCCGAGGGg -3' miRNA: 3'- -GGUUgCGGA--GGCUCGaCGGGCUCUCg -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 75720 | 0.68 | 0.761073 |
Target: 5'- gCCAGCGUgUUgGGGCUcgucgGgCCGGGAGUg -3' miRNA: 3'- -GGUUGCGgAGgCUCGA-----CgGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 71030 | 0.68 | 0.761073 |
Target: 5'- -gAACGCCaUCuCGAGCgcggcggGCCUGGGccAGCa -3' miRNA: 3'- ggUUGCGG-AG-GCUCGa------CGGGCUC--UCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 124243 | 0.68 | 0.788072 |
Target: 5'- cCCAGacCGCC-CUGcGGCUGaCCCuGGAGCg -3' miRNA: 3'- -GGUU--GCGGaGGC-UCGAC-GGGcUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 107718 | 0.68 | 0.75185 |
Target: 5'- gCGACGCCUCCaGGGCccaggaauuccUGUUCcAGGGCa -3' miRNA: 3'- gGUUGCGGAGG-CUCG-----------ACGGGcUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 157557 | 0.68 | 0.75185 |
Target: 5'- aCAGCGCCUCCuguGGCaGCuuGgAGAGg -3' miRNA: 3'- gGUUGCGGAGGc--UCGaCGggC-UCUCg -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 76976 | 0.67 | 0.838348 |
Target: 5'- cCCGAgGCCUCCGuGUUGUUgGuGuaGGCg -3' miRNA: 3'- -GGUUgCGGAGGCuCGACGGgCuC--UCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 52937 | 0.67 | 0.838348 |
Target: 5'- cCCGGCGCC-CgGAGg-GgCCGGGGGUu -3' miRNA: 3'- -GGUUGCGGaGgCUCgaCgGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 120900 | 0.67 | 0.838348 |
Target: 5'- aCAACGCCcCCaagcaccgccgcGAGCUGCgCGcgcuggccaAGAGCc -3' miRNA: 3'- gGUUGCGGaGG------------CUCGACGgGC---------UCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 29937 | 0.67 | 0.837558 |
Target: 5'- uCCcuCGCuucucugauuuuuCUCCGAaucaugGCCCGAGAGCu -3' miRNA: 3'- -GGuuGCG-------------GAGGCUcga---CGGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 124918 | 0.67 | 0.795953 |
Target: 5'- gCAcCGCCUCCGAagaugugGCUGUgCCGGGcGGUg -3' miRNA: 3'- gGUuGCGGAGGCU-------CGACG-GGCUC-UCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 124099 | 0.67 | 0.830364 |
Target: 5'- gCCGACGggggCgGAGCgUGCauCCGAGAGCu -3' miRNA: 3'- -GGUUGCgga-GgCUCG-ACG--GGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 50972 | 0.67 | 0.829556 |
Target: 5'- aCguGCGCCUgCCcgugugcGAGCUGCggggggaCGGGGGCg -3' miRNA: 3'- -GguUGCGGA-GG-------CUCGACGg------GCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 73162 | 0.67 | 0.828747 |
Target: 5'- uCCAGgGCCUCCaccucggucuuugugGGGCUGCCCuccgucaccaggaagGAG-GUg -3' miRNA: 3'- -GGUUgCGGAGG---------------CUCGACGGG---------------CUCuCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 66875 | 0.67 | 0.823035 |
Target: 5'- -aGGCGCCgggggcgggggcgagCCGGGg-GCCgGGGAGCa -3' miRNA: 3'- ggUUGCGGa--------------GGCUCgaCGGgCUCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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