miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3798 3' -58.5 NC_001650.1 + 27779 0.67 0.838348
Target:  5'- cCCAggcucACGC--CCGAGCUgcacgGCCCG-GGGCa -3'
miRNA:   3'- -GGU-----UGCGgaGGCUCGA-----CGGGCuCUCG- -5'
3798 3' -58.5 NC_001650.1 + 131286 0.67 0.830364
Target:  5'- cCCGGCcCCUCCGGGCg--CCGGGAu- -3'
miRNA:   3'- -GGUUGcGGAGGCUCGacgGGCUCUcg -5'
3798 3' -58.5 NC_001650.1 + 82414 0.67 0.822212
Target:  5'- uUAGCGCCUgCUGcGGCUGCU-GAGAGg -3'
miRNA:   3'- gGUUGCGGA-GGC-UCGACGGgCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 27342 0.67 0.822212
Target:  5'- uCCAGgaGgCUCuCGAGCUGgccgaugccCCCGAGAGg -3'
miRNA:   3'- -GGUUg-CgGAG-GCUCGAC---------GGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 131412 0.67 0.806287
Target:  5'- -gAACGCCgcgcccguccugcgcCCGGGC--CCCGAGGGCc -3'
miRNA:   3'- ggUUGCGGa--------------GGCUCGacGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 87737 0.67 0.805434
Target:  5'- gCCAGCacccguccCCUCUG-GCUGCCa-GGAGCa -3'
miRNA:   3'- -GGUUGc-------GGAGGCuCGACGGgcUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 154858 0.67 0.796822
Target:  5'- -gGACGCUgcgcCUGAGCaggugGUCCGAGAGg -3'
miRNA:   3'- ggUUGCGGa---GGCUCGa----CGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 48739 0.67 0.804579
Target:  5'- aCCAccuGCGCCUCCacGGGCaggauuuacUGCUccuuuugCGGGAGCu -3'
miRNA:   3'- -GGU---UGCGGAGG--CUCG---------ACGG-------GCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 62260 0.67 0.805434
Target:  5'- gCAugGCCUCC-AGCU--CgGGGAGCa -3'
miRNA:   3'- gGUugCGGAGGcUCGAcgGgCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 49182 0.67 0.822212
Target:  5'- uCCgAGgGCCg-CGcGCUGgCCGAGGGCg -3'
miRNA:   3'- -GG-UUgCGGagGCuCGACgGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 34667 0.67 0.822212
Target:  5'- aCCAGCGCCUacagCGAGa----CGGGAGCg -3'
miRNA:   3'- -GGUUGCGGAg---GCUCgacggGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 66875 0.67 0.823035
Target:  5'- -aGGCGCCgggggcgggggcgagCCGGGg-GCCgGGGAGCa -3'
miRNA:   3'- ggUUGCGGa--------------GGCUCgaCGGgCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 73162 0.67 0.828747
Target:  5'- uCCAGgGCCUCCaccucggucuuugugGGGCUGCCCuccgucaccaggaagGAG-GUg -3'
miRNA:   3'- -GGUUgCGGAGG---------------CUCGACGGG---------------CUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 50972 0.67 0.829556
Target:  5'- aCguGCGCCUgCCcgugugcGAGCUGCggggggaCGGGGGCg -3'
miRNA:   3'- -GguUGCGGA-GG-------CUCGACGg------GCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 29937 0.67 0.837558
Target:  5'- uCCcuCGCuucucugauuuuuCUCCGAaucaugGCCCGAGAGCu -3'
miRNA:   3'- -GGuuGCG-------------GAGGCUcga---CGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 120900 0.67 0.838348
Target:  5'- aCAACGCCcCCaagcaccgccgcGAGCUGCgCGcgcuggccaAGAGCc -3'
miRNA:   3'- gGUUGCGGaGG------------CUCGACGgGC---------UCUCG- -5'
3798 3' -58.5 NC_001650.1 + 153980 0.67 0.805434
Target:  5'- gCAGgGCCucgaaauacUCUGAGCgggaggggucGCCCGAGAGg -3'
miRNA:   3'- gGUUgCGG---------AGGCUCGa---------CGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 134925 0.67 0.805434
Target:  5'- --cACGCUggCC-AGCUccagGCCCGGGGGCa -3'
miRNA:   3'- gguUGCGGa-GGcUCGA----CGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 76976 0.67 0.838348
Target:  5'- cCCGAgGCCUCCGuGUUGUUgGuGuaGGCg -3'
miRNA:   3'- -GGUUgCGGAGGCuCGACGGgCuC--UCG- -5'
3798 3' -58.5 NC_001650.1 + 92710 0.66 0.871329
Target:  5'- aCAGCGCCcucuuguagaggugCacgaaGAGCUGCCuCGAGAa- -3'
miRNA:   3'- gGUUGCGGa-------------Gg----CUCGACGG-GCUCUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.