miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3798 3' -58.5 NC_001650.1 + 28873 1.12 0.001494
Target:  5'- gCCAACGCCUCCGAGCUGCCCGAGAGCc -3'
miRNA:   3'- -GGUUGCGGAGGCUCGACGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 21625 0.83 0.132972
Target:  5'- gCGcCGUCUCUGAGCUGCCCGcGGGGCu -3'
miRNA:   3'- gGUuGCGGAGGCUCGACGGGC-UCUCG- -5'
3798 3' -58.5 NC_001650.1 + 25654 0.78 0.254943
Target:  5'- aCgGACGCCUUCGAGCUgGgCCGGGuGCu -3'
miRNA:   3'- -GgUUGCGGAGGCUCGA-CgGGCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 50263 0.78 0.266925
Target:  5'- -gGGCGCCUCUcuGC-GCCCGGGAGCg -3'
miRNA:   3'- ggUUGCGGAGGcuCGaCGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 94711 0.75 0.363619
Target:  5'- aCCucCGCCUCCGAGCgGCUCuuuGGGCu -3'
miRNA:   3'- -GGuuGCGGAGGCUCGaCGGGcu-CUCG- -5'
3798 3' -58.5 NC_001650.1 + 122678 0.75 0.379268
Target:  5'- -aGAC-CCUCCuGGGCUGCCUGAG-GCg -3'
miRNA:   3'- ggUUGcGGAGG-CUCGACGGGCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 128248 0.75 0.379268
Target:  5'- cCCugcGCGCCUaCGGGCccgUGCCCGAGGGg -3'
miRNA:   3'- -GGu--UGCGGAgGCUCG---ACGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 156923 0.75 0.395362
Target:  5'- gCCGACGCCUCgUGAGCcuCCCGGGAaaaGCu -3'
miRNA:   3'- -GGUUGCGGAG-GCUCGacGGGCUCU---CG- -5'
3798 3' -58.5 NC_001650.1 + 142487 0.74 0.411891
Target:  5'- cCCGugGCgGCCUCCGAGCUGCUgGAcguGuGCa -3'
miRNA:   3'- -GGU--UG-CGGAGGCUCGACGGgCU---CuCG- -5'
3798 3' -58.5 NC_001650.1 + 103362 0.74 0.411891
Target:  5'- gCCAACGCgUCCGuGCcccaGCCUGAG-GCu -3'
miRNA:   3'- -GGUUGCGgAGGCuCGa---CGGGCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 82602 0.74 0.417776
Target:  5'- aCCAggaGCGCCUCgGggauggggaagaggGGCUGCCCGcuGGCg -3'
miRNA:   3'- -GGU---UGCGGAGgC--------------UCGACGGGCucUCG- -5'
3798 3' -58.5 NC_001650.1 + 69626 0.74 0.42884
Target:  5'- gCCAGCaCCUgCCGucacCUGUCCGAGAGCu -3'
miRNA:   3'- -GGUUGcGGA-GGCuc--GACGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 130005 0.73 0.463933
Target:  5'- gCCGGgaGCCUguaacccugagcCUGGGCgGCCCGGGAGCu -3'
miRNA:   3'- -GGUUg-CGGA------------GGCUCGaCGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 35592 0.73 0.463933
Target:  5'- uCCGGCGCgUgCGAGC-GCCUGGGGGa -3'
miRNA:   3'- -GGUUGCGgAgGCUCGaCGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 127379 0.73 0.463933
Target:  5'- aCGACGUCcCCGAGCccgccaggaGcCCCGAGAGCc -3'
miRNA:   3'- gGUUGCGGaGGCUCGa--------C-GGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 81584 0.73 0.482034
Target:  5'- aCCAGgGCCUCgGGGUcGCCCGAcgcGAGg -3'
miRNA:   3'- -GGUUgCGGAGgCUCGaCGGGCU---CUCg -5'
3798 3' -58.5 NC_001650.1 + 60646 0.73 0.491211
Target:  5'- gCCAcCGUCUCC-AGCUGCCUGGGguuggagaaGGCg -3'
miRNA:   3'- -GGUuGCGGAGGcUCGACGGGCUC---------UCG- -5'
3798 3' -58.5 NC_001650.1 + 30804 0.72 0.547815
Target:  5'- gCGGCGCUgCgCGuGCUGaCCGAGAGCu -3'
miRNA:   3'- gGUUGCGGaG-GCuCGACgGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 105115 0.71 0.56716
Target:  5'- uCCuccCGCCcgCCGAGCggccgcGCCCG-GAGCc -3'
miRNA:   3'- -GGuu-GCGGa-GGCUCGa-----CGGGCuCUCG- -5'
3798 3' -58.5 NC_001650.1 + 22052 0.71 0.56716
Target:  5'- cCCAaggcggacGCGCUcgCCaAGCUGCCCGAGAuGUu -3'
miRNA:   3'- -GGU--------UGCGGa-GGcUCGACGGGCUCU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.