miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3798 3' -58.5 NC_001650.1 + 66380 0.69 0.68501
Target:  5'- gCCAACguguGCCUgCccGCgUGCCUGAGGGCg -3'
miRNA:   3'- -GGUUG----CGGAgGcuCG-ACGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 67100 0.69 0.694745
Target:  5'- gCGACGUCUCCaAGCUGCCCcc--GCc -3'
miRNA:   3'- gGUUGCGGAGGcUCGACGGGcucuCG- -5'
3798 3' -58.5 NC_001650.1 + 26971 0.69 0.704432
Target:  5'- gCGACGCCUUUaAGgUGCCCcuguacgacgGGGAGCu -3'
miRNA:   3'- gGUUGCGGAGGcUCgACGGG----------CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 124452 0.69 0.704432
Target:  5'- uCCAGCGUgUCCGuggggGGCgccucgccCCCGGGGGCc -3'
miRNA:   3'- -GGUUGCGgAGGC-----UCGac------GGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 160992 0.69 0.704432
Target:  5'- cCCAGCaggaCCUcCCGGGC-GUCCGAGGGg -3'
miRNA:   3'- -GGUUGc---GGA-GGCUCGaCGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 56002 0.69 0.704432
Target:  5'- aUCAGCGCCUCgaagGAGUUGCUCucccGGGCg -3'
miRNA:   3'- -GGUUGCGGAGg---CUCGACGGGcu--CUCG- -5'
3798 3' -58.5 NC_001650.1 + 133395 0.69 0.714061
Target:  5'- cCCucgcGCGCCggggCCGcGgUGCCCGAGAa- -3'
miRNA:   3'- -GGu---UGCGGa---GGCuCgACGGGCUCUcg -5'
3798 3' -58.5 NC_001650.1 + 76853 0.69 0.714061
Target:  5'- -gGACGaCUCUGAGC-GCgUGAGGGCa -3'
miRNA:   3'- ggUUGCgGAGGCUCGaCGgGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 88223 0.69 0.733118
Target:  5'- gCGAgGCCUCCGc---GUUCGAGAGCg -3'
miRNA:   3'- gGUUgCGGAGGCucgaCGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 156847 0.69 0.733118
Target:  5'- gUCAGgGCCUCCacccuCUGCUCGGGGGUc -3'
miRNA:   3'- -GGUUgCGGAGGcuc--GACGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 26061 0.69 0.733118
Target:  5'- aCAGCGgCggcCUGAGCgccgGCCUGAGGGa -3'
miRNA:   3'- gGUUGCgGa--GGCUCGa---CGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 55049 0.69 0.733118
Target:  5'- uCCAGCuugaccGCCUCCGAGaggGCgaaGAGGGCc -3'
miRNA:   3'- -GGUUG------CGGAGGCUCga-CGgg-CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 157641 0.69 0.733118
Target:  5'- ----gGCCUCCaccguGAGC--CCCGAGAGCa -3'
miRNA:   3'- gguugCGGAGG-----CUCGacGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 105159 0.69 0.736893
Target:  5'- cCCGACGCCUcggCCGcuauccucuccagagGGCUcuCCCGGGAGg -3'
miRNA:   3'- -GGUUGCGGA---GGC---------------UCGAc-GGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 129588 0.68 0.741592
Target:  5'- uCCAgaACGCCUUCGAcaacaugGC-GUUCGGGGGCa -3'
miRNA:   3'- -GGU--UGCGGAGGCU-------CGaCGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 127515 0.68 0.742529
Target:  5'- -uGGCGCCcUCGAGCggcagcggGCCgCGAGuGCa -3'
miRNA:   3'- ggUUGCGGaGGCUCGa-------CGG-GCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 26812 0.68 0.75185
Target:  5'- gCCGcGCGCCccUUCGAGUUGgCCGAccugGGGCa -3'
miRNA:   3'- -GGU-UGCGG--AGGCUCGACgGGCU----CUCG- -5'
3798 3' -58.5 NC_001650.1 + 107718 0.68 0.75185
Target:  5'- gCGACGCCUCCaGGGCccaggaauuccUGUUCcAGGGCa -3'
miRNA:   3'- gGUUGCGGAGG-CUCG-----------ACGGGcUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 157557 0.68 0.75185
Target:  5'- aCAGCGCCUCCuguGGCaGCuuGgAGAGg -3'
miRNA:   3'- gGUUGCGGAGGc--UCGaCGggC-UCUCg -5'
3798 3' -58.5 NC_001650.1 + 30394 0.68 0.75185
Target:  5'- aCAGCGUCUUCuauuGuCUGCCCgcaGAGGGCg -3'
miRNA:   3'- gGUUGCGGAGGcu--C-GACGGG---CUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.