Results 81 - 100 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
3798 | 3' | -58.5 | NC_001650.1 | + | 134925 | 0.67 | 0.805434 |
Target: 5'- --cACGCUggCC-AGCUccagGCCCGGGGGCa -3' miRNA: 3'- gguUGCGGa-GGcUCGA----CGGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 131412 | 0.67 | 0.806287 |
Target: 5'- -gAACGCCgcgcccguccugcgcCCGGGC--CCCGAGGGCc -3' miRNA: 3'- ggUUGCGGa--------------GGCUCGacGGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 76437 | 0.67 | 0.8139 |
Target: 5'- aCCAcCGCCaccagggugucgUCCGAGCcGCCCuuGuGCu -3' miRNA: 3'- -GGUuGCGG------------AGGCUCGaCGGGcuCuCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 82414 | 0.67 | 0.822212 |
Target: 5'- uUAGCGCCUgCUGcGGCUGCU-GAGAGg -3' miRNA: 3'- gGUUGCGGA-GGC-UCGACGGgCUCUCg -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 104511 | 0.67 | 0.822212 |
Target: 5'- cCCuACGUgcCCGcGCUcGCCCGAGAcGCa -3' miRNA: 3'- -GGuUGCGgaGGCuCGA-CGGGCUCU-CG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 49182 | 0.67 | 0.822212 |
Target: 5'- uCCgAGgGCCg-CGcGCUGgCCGAGGGCg -3' miRNA: 3'- -GG-UUgCGGagGCuCGACgGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 27342 | 0.67 | 0.822212 |
Target: 5'- uCCAGgaGgCUCuCGAGCUGgccgaugccCCCGAGAGg -3' miRNA: 3'- -GGUUg-CgGAG-GCUCGAC---------GGGCUCUCg -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 34667 | 0.67 | 0.822212 |
Target: 5'- aCCAGCGCCUacagCGAGa----CGGGAGCg -3' miRNA: 3'- -GGUUGCGGAg---GCUCgacggGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 66875 | 0.67 | 0.823035 |
Target: 5'- -aGGCGCCgggggcgggggcgagCCGGGg-GCCgGGGAGCa -3' miRNA: 3'- ggUUGCGGa--------------GGCUCgaCGGgCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 73162 | 0.67 | 0.828747 |
Target: 5'- uCCAGgGCCUCCaccucggucuuugugGGGCUGCCCuccgucaccaggaagGAG-GUg -3' miRNA: 3'- -GGUUgCGGAGG---------------CUCGACGGG---------------CUCuCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 50972 | 0.67 | 0.829556 |
Target: 5'- aCguGCGCCUgCCcgugugcGAGCUGCggggggaCGGGGGCg -3' miRNA: 3'- -GguUGCGGA-GG-------CUCGACGg------GCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 124099 | 0.67 | 0.830364 |
Target: 5'- gCCGACGggggCgGAGCgUGCauCCGAGAGCu -3' miRNA: 3'- -GGUUGCgga-GgCUCG-ACG--GGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 131286 | 0.67 | 0.830364 |
Target: 5'- cCCGGCcCCUCCGGGCg--CCGGGAu- -3' miRNA: 3'- -GGUUGcGGAGGCUCGacgGGCUCUcg -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 29937 | 0.67 | 0.837558 |
Target: 5'- uCCcuCGCuucucugauuuuuCUCCGAaucaugGCCCGAGAGCu -3' miRNA: 3'- -GGuuGCG-------------GAGGCUcga---CGGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 120900 | 0.67 | 0.838348 |
Target: 5'- aCAACGCCcCCaagcaccgccgcGAGCUGCgCGcgcuggccaAGAGCc -3' miRNA: 3'- gGUUGCGGaGG------------CUCGACGgGC---------UCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 76976 | 0.67 | 0.838348 |
Target: 5'- cCCGAgGCCUCCGuGUUGUUgGuGuaGGCg -3' miRNA: 3'- -GGUUgCGGAGGCuCGACGGgCuC--UCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 63305 | 0.67 | 0.838348 |
Target: 5'- gCCAGCGCgcgcagCUCgCGGcGgUGCuuGGGGGCg -3' miRNA: 3'- -GGUUGCG------GAG-GCU-CgACGggCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 52937 | 0.67 | 0.838348 |
Target: 5'- cCCGGCGCC-CgGAGg-GgCCGGGGGUu -3' miRNA: 3'- -GGUUGCGGaGgCUCgaCgGGCUCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 27779 | 0.67 | 0.838348 |
Target: 5'- cCCAggcucACGC--CCGAGCUgcacgGCCCG-GGGCa -3' miRNA: 3'- -GGU-----UGCGgaGGCUCGA-----CGGGCuCUCG- -5' |
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3798 | 3' | -58.5 | NC_001650.1 | + | 79399 | 0.66 | 0.846159 |
Target: 5'- cCCGucGCGCCcCCGGGCggcGCcCCGuGGGa -3' miRNA: 3'- -GGU--UGCGGaGGCUCGa--CG-GGCuCUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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