miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3798 3' -58.5 NC_001650.1 + 8565 0.66 0.861232
Target:  5'- cCCAGC-CCUgCGGGgUGCCgGGGuuaGGCc -3'
miRNA:   3'- -GGUUGcGGAgGCUCgACGGgCUC---UCG- -5'
3798 3' -58.5 NC_001650.1 + 8850 0.7 0.675234
Target:  5'- cCCucgguguCGCCcccUCgCGGacGCUGCCUGGGAGCg -3'
miRNA:   3'- -GGuu-----GCGG---AG-GCU--CGACGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 9438 0.66 0.861232
Target:  5'- aCAugGCCUCUGguuaauuaGGCggggGCCaaugGGGGGCc -3'
miRNA:   3'- gGUugCGGAGGC--------UCGa---CGGg---CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 14448 0.65 0.880356
Target:  5'- gCCAAUgggagGCCUCCGggcccggcgacgucAGCUGUugCCaGGGGGCu -3'
miRNA:   3'- -GGUUG-----CGGAGGC--------------UCGACG--GG-CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 18581 0.66 0.853789
Target:  5'- -aAGCGgCUUuuuaccccauUGAGCUGCCCGcGGGUa -3'
miRNA:   3'- ggUUGCgGAG----------GCUCGACGGGCuCUCG- -5'
3798 3' -58.5 NC_001650.1 + 19559 0.66 0.875538
Target:  5'- -gAGCGCCgcggucccaCCGGGa-GCCCGGGuGCc -3'
miRNA:   3'- ggUUGCGGa--------GGCUCgaCGGGCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 21625 0.83 0.132972
Target:  5'- gCGcCGUCUCUGAGCUGCCCGcGGGGCu -3'
miRNA:   3'- gGUuGCGGAGGCUCGACGGGC-UCUCG- -5'
3798 3' -58.5 NC_001650.1 + 22052 0.71 0.56716
Target:  5'- cCCAaggcggacGCGCUcgCCaAGCUGCCCGAGAuGUu -3'
miRNA:   3'- -GGU--------UGCGGa-GGcUCGACGGGCUCU-CG- -5'
3798 3' -58.5 NC_001650.1 + 22286 0.67 0.796822
Target:  5'- aCCGGgGCCUCgGAGCUGgaccuccucuaCUCGGaGGCg -3'
miRNA:   3'- -GGUUgCGGAGgCUCGAC-----------GGGCUcUCG- -5'
3798 3' -58.5 NC_001650.1 + 22626 0.66 0.875538
Target:  5'- uUCAGCGCC-CCcAGC-GCgCgGGGGGCg -3'
miRNA:   3'- -GGUUGCGGaGGcUCGaCG-GgCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 25654 0.78 0.254943
Target:  5'- aCgGACGCCUUCGAGCUgGgCCGGGuGCu -3'
miRNA:   3'- -GgUUGCGGAGGCUCGA-CgGGCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 26061 0.69 0.733118
Target:  5'- aCAGCGgCggcCUGAGCgccgGCCUGAGGGa -3'
miRNA:   3'- gGUUGCgGa--GGCUCGa---CGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 26812 0.68 0.75185
Target:  5'- gCCGcGCGCCccUUCGAGUUGgCCGAccugGGGCa -3'
miRNA:   3'- -GGU-UGCGG--AGGCUCGACgGGCU----CUCG- -5'
3798 3' -58.5 NC_001650.1 + 26971 0.69 0.704432
Target:  5'- gCGACGCCUUUaAGgUGCCCcuguacgacgGGGAGCu -3'
miRNA:   3'- gGUUGCGGAGGcUCgACGGG----------CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 27260 0.7 0.675234
Target:  5'- -uGugGCCaCgGAGCUGgCCGuGAGCu -3'
miRNA:   3'- ggUugCGGaGgCUCGACgGGCuCUCG- -5'
3798 3' -58.5 NC_001650.1 + 27342 0.67 0.822212
Target:  5'- uCCAGgaGgCUCuCGAGCUGgccgaugccCCCGAGAGg -3'
miRNA:   3'- -GGUUg-CgGAG-GCUCGAC---------GGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 27779 0.67 0.838348
Target:  5'- cCCAggcucACGC--CCGAGCUgcacgGCCCG-GGGCa -3'
miRNA:   3'- -GGU-----UGCGgaGGCUCGA-----CGGGCuCUCG- -5'
3798 3' -58.5 NC_001650.1 + 28873 1.12 0.001494
Target:  5'- gCCAACGCCUCCGAGCUGCCCGAGAGCc -3'
miRNA:   3'- -GGUUGCGGAGGCUCGACGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 29937 0.67 0.837558
Target:  5'- uCCcuCGCuucucugauuuuuCUCCGAaucaugGCCCGAGAGCu -3'
miRNA:   3'- -GGuuGCG-------------GAGGCUcga---CGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 30394 0.68 0.75185
Target:  5'- aCAGCGUCUUCuauuGuCUGCCCgcaGAGGGCg -3'
miRNA:   3'- gGUUGCGGAGGcu--C-GACGGG---CUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.