miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3798 3' -58.5 NC_001650.1 + 55049 0.69 0.733118
Target:  5'- uCCAGCuugaccGCCUCCGAGaggGCgaaGAGGGCc -3'
miRNA:   3'- -GGUUG------CGGAGGCUCga-CGgg-CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 56002 0.69 0.704432
Target:  5'- aUCAGCGCCUCgaagGAGUUGCUCucccGGGCg -3'
miRNA:   3'- -GGUUGCGGAGg---CUCGACGGGcu--CUCG- -5'
3798 3' -58.5 NC_001650.1 + 58964 0.68 0.788072
Target:  5'- gCGGCgGCUUCUG-GCacggGCCCGGGAGg -3'
miRNA:   3'- gGUUG-CGGAGGCuCGa---CGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 59388 0.71 0.616158
Target:  5'- uUAACGCCaaCCGcgcGCUGCUgGAGGGCc -3'
miRNA:   3'- gGUUGCGGa-GGCu--CGACGGgCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 60646 0.73 0.491211
Target:  5'- gCCAcCGUCUCC-AGCUGCCUGGGguuggagaaGGCg -3'
miRNA:   3'- -GGUuGCGGAGGcUCGACGGGCUC---------UCG- -5'
3798 3' -58.5 NC_001650.1 + 60885 0.66 0.868484
Target:  5'- gCCAGCaCCUCC-AGgaGcCCCGucauGAGCu -3'
miRNA:   3'- -GGUUGcGGAGGcUCgaC-GGGCu---CUCG- -5'
3798 3' -58.5 NC_001650.1 + 62260 0.67 0.805434
Target:  5'- gCAugGCCUCC-AGCU--CgGGGAGCa -3'
miRNA:   3'- gGUugCGGAGGcUCGAcgGgCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 63305 0.67 0.838348
Target:  5'- gCCAGCGCgcgcagCUCgCGGcGgUGCuuGGGGGCg -3'
miRNA:   3'- -GGUUGCG------GAG-GCU-CgACGggCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 66380 0.69 0.68501
Target:  5'- gCCAACguguGCCUgCccGCgUGCCUGAGGGCg -3'
miRNA:   3'- -GGUUG----CGGAgGcuCG-ACGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 66875 0.67 0.823035
Target:  5'- -aGGCGCCgggggcgggggcgagCCGGGg-GCCgGGGAGCa -3'
miRNA:   3'- ggUUGCGGa--------------GGCUCgaCGGgCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 67100 0.69 0.694745
Target:  5'- gCGACGUCUCCaAGCUGCCCcc--GCc -3'
miRNA:   3'- gGUUGCGGAGGcUCGACGGGcucuCG- -5'
3798 3' -58.5 NC_001650.1 + 69160 0.66 0.871329
Target:  5'- gCgAGCGCCUCCaGGUccgGCCaguccgccacgaagGAGAGCa -3'
miRNA:   3'- -GgUUGCGGAGGcUCGa--CGGg-------------CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 69626 0.74 0.42884
Target:  5'- gCCAGCaCCUgCCGucacCUGUCCGAGAGCu -3'
miRNA:   3'- -GGUUGcGGA-GGCuc--GACGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 71030 0.68 0.761073
Target:  5'- -gAACGCCaUCuCGAGCgcggcggGCCUGGGccAGCa -3'
miRNA:   3'- ggUUGCGG-AG-GCUCGa------CGGGCUC--UCG- -5'
3798 3' -58.5 NC_001650.1 + 71412 0.7 0.665426
Target:  5'- cCCGAgGCCcCCGAGCgcauggagGCCCacGGGCu -3'
miRNA:   3'- -GGUUgCGGaGGCUCGa-------CGGGcuCUCG- -5'
3798 3' -58.5 NC_001650.1 + 73162 0.67 0.828747
Target:  5'- uCCAGgGCCUCCaccucggucuuugugGGGCUGCCCuccgucaccaggaagGAG-GUg -3'
miRNA:   3'- -GGUUgCGGAGG---------------CUCGACGGG---------------CUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 74735 0.65 0.881036
Target:  5'- uCCGGCGaCC-CCGGGUggcacacgaagaGCCUGAGcAGCc -3'
miRNA:   3'- -GGUUGC-GGaGGCUCGa-----------CGGGCUC-UCG- -5'
3798 3' -58.5 NC_001650.1 + 74859 0.66 0.875538
Target:  5'- cCCGucCGCgUCCGGGagGCCCGGGcagaucuccAGCa -3'
miRNA:   3'- -GGUu-GCGgAGGCUCgaCGGGCUC---------UCG- -5'
3798 3' -58.5 NC_001650.1 + 75720 0.68 0.761073
Target:  5'- gCCAGCGUgUUgGGGCUcgucgGgCCGGGAGUg -3'
miRNA:   3'- -GGUUGCGgAGgCUCGA-----CgGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 76437 0.67 0.8139
Target:  5'- aCCAcCGCCaccagggugucgUCCGAGCcGCCCuuGuGCu -3'
miRNA:   3'- -GGUuGCGG------------AGGCUCGaCGGGcuCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.