miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3798 3' -58.5 NC_001650.1 + 76853 0.69 0.714061
Target:  5'- -gGACGaCUCUGAGC-GCgUGAGGGCa -3'
miRNA:   3'- ggUUGCgGAGGCUCGaCGgGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 76976 0.67 0.838348
Target:  5'- cCCGAgGCCUCCGuGUUGUUgGuGuaGGCg -3'
miRNA:   3'- -GGUUgCGGAGGCuCGACGGgCuC--UCG- -5'
3798 3' -58.5 NC_001650.1 + 77792 0.66 0.853789
Target:  5'- cUCGAgGCCgcugCCgGAGCUGCUgGAcGGCc -3'
miRNA:   3'- -GGUUgCGGa---GG-CUCGACGGgCUcUCG- -5'
3798 3' -58.5 NC_001650.1 + 78246 0.7 0.645742
Target:  5'- cCCGGCGUCgUCCGAGUacugggGCCgGuuGAGCa -3'
miRNA:   3'- -GGUUGCGG-AGGCUCGa-----CGGgCu-CUCG- -5'
3798 3' -58.5 NC_001650.1 + 78631 0.66 0.861232
Target:  5'- gCAGacuaGCC-CaCGugguGCUGCCCGAG-GCg -3'
miRNA:   3'- gGUUg---CGGaG-GCu---CGACGGGCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 79399 0.66 0.846159
Target:  5'- cCCGucGCGCCcCCGGGCggcGCcCCGuGGGa -3'
miRNA:   3'- -GGU--UGCGGaGGCUCGa--CG-GGCuCUCg -5'
3798 3' -58.5 NC_001650.1 + 81584 0.73 0.482034
Target:  5'- aCCAGgGCCUCgGGGUcGCCCGAcgcGAGg -3'
miRNA:   3'- -GGUUgCGGAGgCUCGaCGGGCU---CUCg -5'
3798 3' -58.5 NC_001650.1 + 82414 0.67 0.822212
Target:  5'- uUAGCGCCUgCUGcGGCUGCU-GAGAGg -3'
miRNA:   3'- gGUUGCGGA-GGC-UCGACGGgCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 82602 0.74 0.417776
Target:  5'- aCCAggaGCGCCUCgGggauggggaagaggGGCUGCCCGcuGGCg -3'
miRNA:   3'- -GGU---UGCGGAGgC--------------UCGACGGGCucUCG- -5'
3798 3' -58.5 NC_001650.1 + 83773 0.66 0.861232
Target:  5'- cCCGgguacGCGCCgUCCGGGg-GCCCcuggGAGGGUc -3'
miRNA:   3'- -GGU-----UGCGG-AGGCUCgaCGGG----CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 87737 0.67 0.805434
Target:  5'- gCCAGCacccguccCCUCUG-GCUGCCa-GGAGCa -3'
miRNA:   3'- -GGUUGc-------GGAGGCuCGACGGgcUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 88223 0.69 0.733118
Target:  5'- gCGAgGCCUCCGc---GUUCGAGAGCg -3'
miRNA:   3'- gGUUgCGGAGGCucgaCGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 90044 0.67 0.796822
Target:  5'- cCCGAUGCCcgUUGA-CUGCCUGAG-GCc -3'
miRNA:   3'- -GGUUGCGGa-GGCUcGACGGGCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 92710 0.66 0.871329
Target:  5'- aCAGCGCCcucuuguagaggugCacgaaGAGCUGCCuCGAGAa- -3'
miRNA:   3'- gGUUGCGGa-------------Gg----CUCGACGG-GCUCUcg -5'
3798 3' -58.5 NC_001650.1 + 93806 0.7 0.655592
Target:  5'- aUCGAC-CCUUCGuGgUGCCCaAGAGCa -3'
miRNA:   3'- -GGUUGcGGAGGCuCgACGGGcUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 94711 0.75 0.363619
Target:  5'- aCCucCGCCUCCGAGCgGCUCuuuGGGCu -3'
miRNA:   3'- -GGuuGCGGAGGCUCGaCGGGcu-CUCG- -5'
3798 3' -58.5 NC_001650.1 + 101531 0.67 0.804579
Target:  5'- gCAACGCCUCaGAGaaccGCCCGuggucaaAGGGUa -3'
miRNA:   3'- gGUUGCGGAGgCUCga--CGGGC-------UCUCG- -5'
3798 3' -58.5 NC_001650.1 + 102370 0.7 0.624045
Target:  5'- uCCAACGCCaugcugcagUCCGuGCUGCagcagcaggggGGGAGCg -3'
miRNA:   3'- -GGUUGCGG---------AGGCuCGACGgg---------CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 103362 0.74 0.411891
Target:  5'- gCCAACGCgUCCGuGCcccaGCCUGAG-GCu -3'
miRNA:   3'- -GGUUGCGgAGGCuCGa---CGGGCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 103756 0.71 0.586674
Target:  5'- gCGACgGCCUCCcccagGUCCGAGAGCg -3'
miRNA:   3'- gGUUG-CGGAGGcucgaCGGGCUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.