miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3798 3' -58.5 NC_001650.1 + 104511 0.67 0.822212
Target:  5'- cCCuACGUgcCCGcGCUcGCCCGAGAcGCa -3'
miRNA:   3'- -GGuUGCGgaGGCuCGA-CGGGCUCU-CG- -5'
3798 3' -58.5 NC_001650.1 + 104922 0.66 0.875538
Target:  5'- aCCAuaGCCUCCuuuGCgGCCUGGGucAGCa -3'
miRNA:   3'- -GGUugCGGAGGcu-CGaCGGGCUC--UCG- -5'
3798 3' -58.5 NC_001650.1 + 105115 0.71 0.56716
Target:  5'- uCCuccCGCCcgCCGAGCggccgcGCCCG-GAGCc -3'
miRNA:   3'- -GGuu-GCGGa-GGCUCGa-----CGGGCuCUCG- -5'
3798 3' -58.5 NC_001650.1 + 105159 0.69 0.736893
Target:  5'- cCCGACGCCUcggCCGcuauccucuccagagGGCUcuCCCGGGAGg -3'
miRNA:   3'- -GGUUGCGGA---GGC---------------UCGAc-GGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 106098 0.68 0.788072
Target:  5'- cCCGugGUCUuuGGGC-GCUCGGGccuGGCc -3'
miRNA:   3'- -GGUugCGGAggCUCGaCGGGCUC---UCG- -5'
3798 3' -58.5 NC_001650.1 + 107718 0.68 0.75185
Target:  5'- gCGACGCCUCCaGGGCccaggaauuccUGUUCcAGGGCa -3'
miRNA:   3'- gGUUGCGGAGG-CUCG-----------ACGGGcUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 109563 0.66 0.861232
Target:  5'- uCCAAgucCGCCUaCUGGGaggggaacGCCCGGGAGg -3'
miRNA:   3'- -GGUU---GCGGA-GGCUCga------CGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 111077 0.66 0.875538
Target:  5'- cCCAGgGgCUCCagcGGCgccagGCgCGAGGGCg -3'
miRNA:   3'- -GGUUgCgGAGGc--UCGa----CGgGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 112800 0.68 0.77019
Target:  5'- cCCGugGgCCUCCauGC-GCUCGGGGGCc -3'
miRNA:   3'- -GGUugC-GGAGGcuCGaCGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 112945 0.68 0.75185
Target:  5'- aCCAcccACGCCUCCacGGGCUGgUacaGGGGGUu -3'
miRNA:   3'- -GGU---UGCGGAGG--CUCGACgGg--CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 117360 0.71 0.586674
Target:  5'- cCCGGCGCCUCCcgcGGC-GCCCGccaAGCc -3'
miRNA:   3'- -GGUUGCGGAGGc--UCGaCGGGCuc-UCG- -5'
3798 3' -58.5 NC_001650.1 + 117363 0.66 0.875538
Target:  5'- cUCAGCuCCUCCcacAGCUGCCUcucgauaaacaGGGAGUc -3'
miRNA:   3'- -GGUUGcGGAGGc--UCGACGGG-----------CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 119531 0.68 0.77019
Target:  5'- cCCGGgGUUUcaCCGGGUcGCCCGAGGGg -3'
miRNA:   3'- -GGUUgCGGA--GGCUCGaCGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 120111 0.7 0.659528
Target:  5'- uCCGACGCC-CUGaAGgUGCCCagcuugugggucugcGGGGGCa -3'
miRNA:   3'- -GGUUGCGGaGGC-UCgACGGG---------------CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 120900 0.67 0.838348
Target:  5'- aCAACGCCcCCaagcaccgccgcGAGCUGCgCGcgcuggccaAGAGCc -3'
miRNA:   3'- gGUUGCGGaGG------------CUCGACGgGC---------UCUCG- -5'
3798 3' -58.5 NC_001650.1 + 122236 0.66 0.853789
Target:  5'- cCCGAgGCCgggggCGAGgUGCCCcacGAGCu -3'
miRNA:   3'- -GGUUgCGGag---GCUCgACGGGcu-CUCG- -5'
3798 3' -58.5 NC_001650.1 + 122678 0.75 0.379268
Target:  5'- -aGAC-CCUCCuGGGCUGCCUGAG-GCg -3'
miRNA:   3'- ggUUGcGGAGG-CUCGACGGGCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 124099 0.67 0.830364
Target:  5'- gCCGACGggggCgGAGCgUGCauCCGAGAGCu -3'
miRNA:   3'- -GGUUGCgga-GgCUCG-ACG--GGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 124243 0.68 0.788072
Target:  5'- cCCAGacCGCC-CUGcGGCUGaCCCuGGAGCg -3'
miRNA:   3'- -GGUU--GCGGaGGC-UCGAC-GGGcUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 124452 0.69 0.704432
Target:  5'- uCCAGCGUgUCCGuggggGGCgccucgccCCCGGGGGCc -3'
miRNA:   3'- -GGUUGCGgAGGC-----UCGac------GGGCUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.