miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3798 3' -58.5 NC_001650.1 + 131506 0.68 0.77019
Target:  5'- aCCGugGCCcccuggaccgucUCCccgcuGCgGCCCGAGAGg -3'
miRNA:   3'- -GGUugCGG------------AGGcu---CGaCGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 131412 0.67 0.806287
Target:  5'- -gAACGCCgcgcccguccugcgcCCGGGC--CCCGAGGGCc -3'
miRNA:   3'- ggUUGCGGa--------------GGCUCGacGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 131286 0.67 0.830364
Target:  5'- cCCGGCcCCUCCGGGCg--CCGGGAu- -3'
miRNA:   3'- -GGUUGcGGAGGCUCGacgGGCUCUcg -5'
3798 3' -58.5 NC_001650.1 + 131028 0.71 0.586674
Target:  5'- -gGACGCgagCCGGGCUccgGuCCCGAGGGCc -3'
miRNA:   3'- ggUUGCGga-GGCUCGA---C-GGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 130005 0.73 0.463933
Target:  5'- gCCGGgaGCCUguaacccugagcCUGGGCgGCCCGGGAGCu -3'
miRNA:   3'- -GGUUg-CGGA------------GGCUCGaCGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 129588 0.68 0.741592
Target:  5'- uCCAgaACGCCUUCGAcaacaugGC-GUUCGGGGGCa -3'
miRNA:   3'- -GGU--UGCGGAGGCU-------CGaCGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 129245 0.66 0.861232
Target:  5'- uCCGACGCCcacUCCcuGGUgGCCCGcuccgccgccaAGGGCg -3'
miRNA:   3'- -GGUUGCGG---AGGc-UCGaCGGGC-----------UCUCG- -5'
3798 3' -58.5 NC_001650.1 + 128248 0.75 0.379268
Target:  5'- cCCugcGCGCCUaCGGGCccgUGCCCGAGGGg -3'
miRNA:   3'- -GGu--UGCGGAgGCUCG---ACGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 127515 0.68 0.742529
Target:  5'- -uGGCGCCcUCGAGCggcagcggGCCgCGAGuGCa -3'
miRNA:   3'- ggUUGCGGaGGCUCGa-------CGG-GCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 127379 0.73 0.463933
Target:  5'- aCGACGUCcCCGAGCccgccaggaGcCCCGAGAGCc -3'
miRNA:   3'- gGUUGCGGaGGCUCGa--------C-GGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 125835 0.66 0.861232
Target:  5'- cCCGGC-CC-CCGAGagcCUGCCCGAGc-- -3'
miRNA:   3'- -GGUUGcGGaGGCUC---GACGGGCUCucg -5'
3798 3' -58.5 NC_001650.1 + 124918 0.67 0.795953
Target:  5'- gCAcCGCCUCCGAagaugugGCUGUgCCGGGcGGUg -3'
miRNA:   3'- gGUuGCGGAGGCU-------CGACG-GGCUC-UCG- -5'
3798 3' -58.5 NC_001650.1 + 124452 0.69 0.704432
Target:  5'- uCCAGCGUgUCCGuggggGGCgccucgccCCCGGGGGCc -3'
miRNA:   3'- -GGUUGCGgAGGC-----UCGac------GGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 124243 0.68 0.788072
Target:  5'- cCCAGacCGCC-CUGcGGCUGaCCCuGGAGCg -3'
miRNA:   3'- -GGUU--GCGGaGGC-UCGAC-GGGcUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 124099 0.67 0.830364
Target:  5'- gCCGACGggggCgGAGCgUGCauCCGAGAGCu -3'
miRNA:   3'- -GGUUGCgga-GgCUCG-ACG--GGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 122678 0.75 0.379268
Target:  5'- -aGAC-CCUCCuGGGCUGCCUGAG-GCg -3'
miRNA:   3'- ggUUGcGGAGG-CUCGACGGGCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 122236 0.66 0.853789
Target:  5'- cCCGAgGCCgggggCGAGgUGCCCcacGAGCu -3'
miRNA:   3'- -GGUUgCGGag---GCUCgACGGGcu-CUCG- -5'
3798 3' -58.5 NC_001650.1 + 120900 0.67 0.838348
Target:  5'- aCAACGCCcCCaagcaccgccgcGAGCUGCgCGcgcuggccaAGAGCc -3'
miRNA:   3'- gGUUGCGGaGG------------CUCGACGgGC---------UCUCG- -5'
3798 3' -58.5 NC_001650.1 + 120111 0.7 0.659528
Target:  5'- uCCGACGCC-CUGaAGgUGCCCagcuugugggucugcGGGGGCa -3'
miRNA:   3'- -GGUUGCGGaGGC-UCgACGGG---------------CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 119531 0.68 0.77019
Target:  5'- cCCGGgGUUUcaCCGGGUcGCCCGAGGGg -3'
miRNA:   3'- -GGUUgCGGA--GGCUCGaCGGGCUCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.