miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3798 3' -58.5 NC_001650.1 + 117363 0.66 0.875538
Target:  5'- cUCAGCuCCUCCcacAGCUGCCUcucgauaaacaGGGAGUc -3'
miRNA:   3'- -GGUUGcGGAGGc--UCGACGGG-----------CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 117360 0.71 0.586674
Target:  5'- cCCGGCGCCUCCcgcGGC-GCCCGccaAGCc -3'
miRNA:   3'- -GGUUGCGGAGGc--UCGaCGGGCuc-UCG- -5'
3798 3' -58.5 NC_001650.1 + 112945 0.68 0.75185
Target:  5'- aCCAcccACGCCUCCacGGGCUGgUacaGGGGGUu -3'
miRNA:   3'- -GGU---UGCGGAGG--CUCGACgGg--CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 112800 0.68 0.77019
Target:  5'- cCCGugGgCCUCCauGC-GCUCGGGGGCc -3'
miRNA:   3'- -GGUugC-GGAGGcuCGaCGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 111077 0.66 0.875538
Target:  5'- cCCAGgGgCUCCagcGGCgccagGCgCGAGGGCg -3'
miRNA:   3'- -GGUUgCgGAGGc--UCGa----CGgGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 109563 0.66 0.861232
Target:  5'- uCCAAgucCGCCUaCUGGGaggggaacGCCCGGGAGg -3'
miRNA:   3'- -GGUU---GCGGA-GGCUCga------CGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 107718 0.68 0.75185
Target:  5'- gCGACGCCUCCaGGGCccaggaauuccUGUUCcAGGGCa -3'
miRNA:   3'- gGUUGCGGAGG-CUCG-----------ACGGGcUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 106098 0.68 0.788072
Target:  5'- cCCGugGUCUuuGGGC-GCUCGGGccuGGCc -3'
miRNA:   3'- -GGUugCGGAggCUCGaCGGGCUC---UCG- -5'
3798 3' -58.5 NC_001650.1 + 105159 0.69 0.736893
Target:  5'- cCCGACGCCUcggCCGcuauccucuccagagGGCUcuCCCGGGAGg -3'
miRNA:   3'- -GGUUGCGGA---GGC---------------UCGAc-GGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 105115 0.71 0.56716
Target:  5'- uCCuccCGCCcgCCGAGCggccgcGCCCG-GAGCc -3'
miRNA:   3'- -GGuu-GCGGa-GGCUCGa-----CGGGCuCUCG- -5'
3798 3' -58.5 NC_001650.1 + 104922 0.66 0.875538
Target:  5'- aCCAuaGCCUCCuuuGCgGCCUGGGucAGCa -3'
miRNA:   3'- -GGUugCGGAGGcu-CGaCGGGCUC--UCG- -5'
3798 3' -58.5 NC_001650.1 + 104511 0.67 0.822212
Target:  5'- cCCuACGUgcCCGcGCUcGCCCGAGAcGCa -3'
miRNA:   3'- -GGuUGCGgaGGCuCGA-CGGGCUCU-CG- -5'
3798 3' -58.5 NC_001650.1 + 103756 0.71 0.586674
Target:  5'- gCGACgGCCUCCcccagGUCCGAGAGCg -3'
miRNA:   3'- gGUUG-CGGAGGcucgaCGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 103362 0.74 0.411891
Target:  5'- gCCAACGCgUCCGuGCcccaGCCUGAG-GCu -3'
miRNA:   3'- -GGUUGCGgAGGCuCGa---CGGGCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 102370 0.7 0.624045
Target:  5'- uCCAACGCCaugcugcagUCCGuGCUGCagcagcaggggGGGAGCg -3'
miRNA:   3'- -GGUUGCGG---------AGGCuCGACGgg---------CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 101531 0.67 0.804579
Target:  5'- gCAACGCCUCaGAGaaccGCCCGuggucaaAGGGUa -3'
miRNA:   3'- gGUUGCGGAGgCUCga--CGGGC-------UCUCG- -5'
3798 3' -58.5 NC_001650.1 + 94711 0.75 0.363619
Target:  5'- aCCucCGCCUCCGAGCgGCUCuuuGGGCu -3'
miRNA:   3'- -GGuuGCGGAGGCUCGaCGGGcu-CUCG- -5'
3798 3' -58.5 NC_001650.1 + 93806 0.7 0.655592
Target:  5'- aUCGAC-CCUUCGuGgUGCCCaAGAGCa -3'
miRNA:   3'- -GGUUGcGGAGGCuCgACGGGcUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 92710 0.66 0.871329
Target:  5'- aCAGCGCCcucuuguagaggugCacgaaGAGCUGCCuCGAGAa- -3'
miRNA:   3'- gGUUGCGGa-------------Gg----CUCGACGG-GCUCUcg -5'
3798 3' -58.5 NC_001650.1 + 90044 0.67 0.796822
Target:  5'- cCCGAUGCCcgUUGA-CUGCCUGAG-GCc -3'
miRNA:   3'- -GGUUGCGGa-GGCUcGACGGGCUCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.