miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3798 3' -58.5 NC_001650.1 + 88223 0.69 0.733118
Target:  5'- gCGAgGCCUCCGc---GUUCGAGAGCg -3'
miRNA:   3'- gGUUgCGGAGGCucgaCGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 87737 0.67 0.805434
Target:  5'- gCCAGCacccguccCCUCUG-GCUGCCa-GGAGCa -3'
miRNA:   3'- -GGUUGc-------GGAGGCuCGACGGgcUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 83773 0.66 0.861232
Target:  5'- cCCGgguacGCGCCgUCCGGGg-GCCCcuggGAGGGUc -3'
miRNA:   3'- -GGU-----UGCGG-AGGCUCgaCGGG----CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 82602 0.74 0.417776
Target:  5'- aCCAggaGCGCCUCgGggauggggaagaggGGCUGCCCGcuGGCg -3'
miRNA:   3'- -GGU---UGCGGAGgC--------------UCGACGGGCucUCG- -5'
3798 3' -58.5 NC_001650.1 + 82414 0.67 0.822212
Target:  5'- uUAGCGCCUgCUGcGGCUGCU-GAGAGg -3'
miRNA:   3'- gGUUGCGGA-GGC-UCGACGGgCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 81584 0.73 0.482034
Target:  5'- aCCAGgGCCUCgGGGUcGCCCGAcgcGAGg -3'
miRNA:   3'- -GGUUgCGGAGgCUCGaCGGGCU---CUCg -5'
3798 3' -58.5 NC_001650.1 + 79399 0.66 0.846159
Target:  5'- cCCGucGCGCCcCCGGGCggcGCcCCGuGGGa -3'
miRNA:   3'- -GGU--UGCGGaGGCUCGa--CG-GGCuCUCg -5'
3798 3' -58.5 NC_001650.1 + 78631 0.66 0.861232
Target:  5'- gCAGacuaGCC-CaCGugguGCUGCCCGAG-GCg -3'
miRNA:   3'- gGUUg---CGGaG-GCu---CGACGGGCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 78246 0.7 0.645742
Target:  5'- cCCGGCGUCgUCCGAGUacugggGCCgGuuGAGCa -3'
miRNA:   3'- -GGUUGCGG-AGGCUCGa-----CGGgCu-CUCG- -5'
3798 3' -58.5 NC_001650.1 + 77792 0.66 0.853789
Target:  5'- cUCGAgGCCgcugCCgGAGCUGCUgGAcGGCc -3'
miRNA:   3'- -GGUUgCGGa---GG-CUCGACGGgCUcUCG- -5'
3798 3' -58.5 NC_001650.1 + 76976 0.67 0.838348
Target:  5'- cCCGAgGCCUCCGuGUUGUUgGuGuaGGCg -3'
miRNA:   3'- -GGUUgCGGAGGCuCGACGGgCuC--UCG- -5'
3798 3' -58.5 NC_001650.1 + 76853 0.69 0.714061
Target:  5'- -gGACGaCUCUGAGC-GCgUGAGGGCa -3'
miRNA:   3'- ggUUGCgGAGGCUCGaCGgGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 76437 0.67 0.8139
Target:  5'- aCCAcCGCCaccagggugucgUCCGAGCcGCCCuuGuGCu -3'
miRNA:   3'- -GGUuGCGG------------AGGCUCGaCGGGcuCuCG- -5'
3798 3' -58.5 NC_001650.1 + 75720 0.68 0.761073
Target:  5'- gCCAGCGUgUUgGGGCUcgucgGgCCGGGAGUg -3'
miRNA:   3'- -GGUUGCGgAGgCUCGA-----CgGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 74859 0.66 0.875538
Target:  5'- cCCGucCGCgUCCGGGagGCCCGGGcagaucuccAGCa -3'
miRNA:   3'- -GGUu-GCGgAGGCUCgaCGGGCUC---------UCG- -5'
3798 3' -58.5 NC_001650.1 + 74735 0.65 0.881036
Target:  5'- uCCGGCGaCC-CCGGGUggcacacgaagaGCCUGAGcAGCc -3'
miRNA:   3'- -GGUUGC-GGaGGCUCGa-----------CGGGCUC-UCG- -5'
3798 3' -58.5 NC_001650.1 + 73162 0.67 0.828747
Target:  5'- uCCAGgGCCUCCaccucggucuuugugGGGCUGCCCuccgucaccaggaagGAG-GUg -3'
miRNA:   3'- -GGUUgCGGAGG---------------CUCGACGGG---------------CUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 71412 0.7 0.665426
Target:  5'- cCCGAgGCCcCCGAGCgcauggagGCCCacGGGCu -3'
miRNA:   3'- -GGUUgCGGaGGCUCGa-------CGGGcuCUCG- -5'
3798 3' -58.5 NC_001650.1 + 71030 0.68 0.761073
Target:  5'- -gAACGCCaUCuCGAGCgcggcggGCCUGGGccAGCa -3'
miRNA:   3'- ggUUGCGG-AG-GCUCGa------CGGGCUC--UCG- -5'
3798 3' -58.5 NC_001650.1 + 69626 0.74 0.42884
Target:  5'- gCCAGCaCCUgCCGucacCUGUCCGAGAGCu -3'
miRNA:   3'- -GGUUGcGGA-GGCuc--GACGGGCUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.