miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3798 3' -58.5 NC_001650.1 + 28873 1.12 0.001494
Target:  5'- gCCAACGCCUCCGAGCUGCCCGAGAGCc -3'
miRNA:   3'- -GGUUGCGGAGGCUCGACGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 67100 0.69 0.694745
Target:  5'- gCGACGUCUCCaAGCUGCCCcc--GCc -3'
miRNA:   3'- gGUUGCGGAGGcUCGACGGGcucuCG- -5'
3798 3' -58.5 NC_001650.1 + 160992 0.69 0.704432
Target:  5'- cCCAGCaggaCCUcCCGGGC-GUCCGAGGGg -3'
miRNA:   3'- -GGUUGc---GGA-GGCUCGaCGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 74735 0.65 0.881036
Target:  5'- uCCGGCGaCC-CCGGGUggcacacgaagaGCCUGAGcAGCc -3'
miRNA:   3'- -GGUUGC-GGaGGCUCGa-----------CGGGCUC-UCG- -5'
3798 3' -58.5 NC_001650.1 + 130005 0.73 0.463933
Target:  5'- gCCGGgaGCCUguaacccugagcCUGGGCgGCCCGGGAGCu -3'
miRNA:   3'- -GGUUg-CGGA------------GGCUCGaCGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 35592 0.73 0.463933
Target:  5'- uCCGGCGCgUgCGAGC-GCCUGGGGGa -3'
miRNA:   3'- -GGUUGCGgAgGCUCGaCGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 103756 0.71 0.586674
Target:  5'- gCGACgGCCUCCcccagGUCCGAGAGCg -3'
miRNA:   3'- gGUUG-CGGAGGcucgaCGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 131028 0.71 0.586674
Target:  5'- -gGACGCgagCCGGGCUccgGuCCCGAGGGCc -3'
miRNA:   3'- ggUUGCGga-GGCUCGA---C-GGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 153801 0.71 0.616158
Target:  5'- gCCgAGCGCCUCCaGGGC-GCCCucugcGGGCa -3'
miRNA:   3'- -GG-UUGCGGAGG-CUCGaCGGGcu---CUCG- -5'
3798 3' -58.5 NC_001650.1 + 66380 0.69 0.68501
Target:  5'- gCCAACguguGCCUgCccGCgUGCCUGAGGGCg -3'
miRNA:   3'- -GGUUG----CGGAgGcuCG-ACGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 78246 0.7 0.645742
Target:  5'- cCCGGCGUCgUCCGAGUacugggGCCgGuuGAGCa -3'
miRNA:   3'- -GGUUGCGG-AGGCUCGa-----CGGgCu-CUCG- -5'
3798 3' -58.5 NC_001650.1 + 54261 0.71 0.59648
Target:  5'- gCCAcggGCGCCUCCagGGGCgUGCCCGccacAGCc -3'
miRNA:   3'- -GGU---UGCGGAGG--CUCG-ACGGGCuc--UCG- -5'
3798 3' -58.5 NC_001650.1 + 25654 0.78 0.254943
Target:  5'- aCgGACGCCUUCGAGCUgGgCCGGGuGCu -3'
miRNA:   3'- -GgUUGCGGAGGCUCGA-CgGGCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 52443 0.7 0.672295
Target:  5'- gCAGCGCCUucaagugguccaccUCGGGcCUGCuCCGGGGGa -3'
miRNA:   3'- gGUUGCGGA--------------GGCUC-GACG-GGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 82602 0.74 0.417776
Target:  5'- aCCAggaGCGCCUCgGggauggggaagaggGGCUGCCCGcuGGCg -3'
miRNA:   3'- -GGU---UGCGGAGgC--------------UCGACGGGCucUCG- -5'
3798 3' -58.5 NC_001650.1 + 117360 0.71 0.586674
Target:  5'- cCCGGCGCCUCCcgcGGC-GCCCGccaAGCc -3'
miRNA:   3'- -GGUUGCGGAGGc--UCGaCGGGCuc-UCG- -5'
3798 3' -58.5 NC_001650.1 + 51830 0.7 0.675234
Target:  5'- cCCGGCcagGCCgUCaaaGAGCUcGgCCGAGGGCg -3'
miRNA:   3'- -GGUUG---CGG-AGg--CUCGA-CgGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 124452 0.69 0.704432
Target:  5'- uCCAGCGUgUCCGuggggGGCgccucgccCCCGGGGGCc -3'
miRNA:   3'- -GGUUGCGgAGGC-----UCGac------GGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 69626 0.74 0.42884
Target:  5'- gCCAGCaCCUgCCGucacCUGUCCGAGAGCu -3'
miRNA:   3'- -GGUUGcGGA-GGCuc--GACGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 105115 0.71 0.56716
Target:  5'- uCCuccCGCCcgCCGAGCggccgcGCCCG-GAGCc -3'
miRNA:   3'- -GGuu-GCGGa-GGCUCGa-----CGGGCuCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.