miRNA display CGI


Results 61 - 80 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3798 3' -58.5 NC_001650.1 + 124452 0.69 0.704432
Target:  5'- uCCAGCGUgUCCGuggggGGCgccucgccCCCGGGGGCc -3'
miRNA:   3'- -GGUUGCGgAGGC-----UCGac------GGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 133395 0.69 0.714061
Target:  5'- cCCucgcGCGCCggggCCGcGgUGCCCGAGAa- -3'
miRNA:   3'- -GGu---UGCGGa---GGCuCgACGGGCUCUcg -5'
3798 3' -58.5 NC_001650.1 + 131412 0.67 0.806287
Target:  5'- -gAACGCCgcgcccguccugcgcCCGGGC--CCCGAGGGCc -3'
miRNA:   3'- ggUUGCGGa--------------GGCUCGacGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 157641 0.69 0.733118
Target:  5'- ----gGCCUCCaccguGAGC--CCCGAGAGCa -3'
miRNA:   3'- gguugCGGAGG-----CUCGacGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 129588 0.68 0.741592
Target:  5'- uCCAgaACGCCUUCGAcaacaugGC-GUUCGGGGGCa -3'
miRNA:   3'- -GGU--UGCGGAGGCU-------CGaCGGGCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 26812 0.68 0.75185
Target:  5'- gCCGcGCGCCccUUCGAGUUGgCCGAccugGGGCa -3'
miRNA:   3'- -GGU-UGCGG--AGGCUCGACgGGCU----CUCG- -5'
3798 3' -58.5 NC_001650.1 + 129245 0.66 0.861232
Target:  5'- uCCGACGCCcacUCCcuGGUgGCCCGcuccgccgccaAGGGCg -3'
miRNA:   3'- -GGUUGCGG---AGGc-UCGaCGGGC-----------UCUCG- -5'
3798 3' -58.5 NC_001650.1 + 103362 0.74 0.411891
Target:  5'- gCCAACGCgUCCGuGCcccaGCCUGAG-GCu -3'
miRNA:   3'- -GGUUGCGgAGGCuCGa---CGGGCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 157557 0.68 0.75185
Target:  5'- aCAGCGCCUCCuguGGCaGCuuGgAGAGg -3'
miRNA:   3'- gGUUGCGGAGGc--UCGaCGggC-UCUCg -5'
3798 3' -58.5 NC_001650.1 + 30394 0.68 0.75185
Target:  5'- aCAGCGUCUUCuauuGuCUGCCCgcaGAGGGCg -3'
miRNA:   3'- gGUUGCGGAGGcu--C-GACGGG---CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 122236 0.66 0.853789
Target:  5'- cCCGAgGCCgggggCGAGgUGCCCcacGAGCu -3'
miRNA:   3'- -GGUUgCGGag---GCUCgACGGGcu-CUCG- -5'
3798 3' -58.5 NC_001650.1 + 78631 0.66 0.861232
Target:  5'- gCAGacuaGCC-CaCGugguGCUGCCCGAG-GCg -3'
miRNA:   3'- gGUUg---CGGaG-GCu---CGACGGGCUCuCG- -5'
3798 3' -58.5 NC_001650.1 + 109563 0.66 0.861232
Target:  5'- uCCAAgucCGCCUaCUGGGaggggaacGCCCGGGAGg -3'
miRNA:   3'- -GGUU---GCGGA-GGCUCga------CGGGCUCUCg -5'
3798 3' -58.5 NC_001650.1 + 134206 0.66 0.861232
Target:  5'- aCCAcacACGCCUCCcccGCggGCa-GAGAGCc -3'
miRNA:   3'- -GGU---UGCGGAGGcu-CGa-CGggCUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 60885 0.66 0.868484
Target:  5'- gCCAGCaCCUCC-AGgaGcCCCGucauGAGCu -3'
miRNA:   3'- -GGUUGcGGAGGcUCgaC-GGGCu---CUCG- -5'
3798 3' -58.5 NC_001650.1 + 69160 0.66 0.871329
Target:  5'- gCgAGCGCCUCCaGGUccgGCCaguccgccacgaagGAGAGCa -3'
miRNA:   3'- -GgUUGCGGAGGcUCGa--CGGg-------------CUCUCG- -5'
3798 3' -58.5 NC_001650.1 + 92710 0.66 0.871329
Target:  5'- aCAGCGCCcucuuguagaggugCacgaaGAGCUGCCuCGAGAa- -3'
miRNA:   3'- gGUUGCGGa-------------Gg----CUCGACGG-GCUCUcg -5'
3798 3' -58.5 NC_001650.1 + 77792 0.66 0.853789
Target:  5'- cUCGAgGCCgcugCCgGAGCUGCUgGAcGGCc -3'
miRNA:   3'- -GGUUgCGGa---GG-CUCGACGGgCUcUCG- -5'
3798 3' -58.5 NC_001650.1 + 53203 0.71 0.60631
Target:  5'- cCCGgcucGCGUC-CCGGGCgGCCCGA-AGCg -3'
miRNA:   3'- -GGU----UGCGGaGGCUCGaCGGGCUcUCG- -5'
3798 3' -58.5 NC_001650.1 + 48939 0.71 0.576899
Target:  5'- gUCAACaCCUCUGAGgUGCCCGu--GCa -3'
miRNA:   3'- -GGUUGcGGAGGCUCgACGGGCucuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.