miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3798 5' -53.8 NC_001650.1 + 154043 0.66 0.976166
Target:  5'- gGGCcUCGcGGGUGUUCUGGAGgAgGUg -3'
miRNA:   3'- gUUGaAGU-CCCACGGGACCUUgUgCG- -5'
3798 5' -53.8 NC_001650.1 + 72739 0.66 0.976166
Target:  5'- cCAGCccgGGGGUGgCCUGGggUAucuUGCu -3'
miRNA:   3'- -GUUGaagUCCCACgGGACCuuGU---GCG- -5'
3798 5' -53.8 NC_001650.1 + 25048 0.66 0.976166
Target:  5'- gGugUUCAGGGUggacgugguGCCaUUGGAAguUGCu -3'
miRNA:   3'- gUugAAGUCCCA---------CGG-GACCUUguGCG- -5'
3798 5' -53.8 NC_001650.1 + 144364 0.66 0.976166
Target:  5'- -cACUaCAGGGUcaCCCUGGAcUGCGUc -3'
miRNA:   3'- guUGAaGUCCCAc-GGGACCUuGUGCG- -5'
3798 5' -53.8 NC_001650.1 + 76176 0.66 0.97358
Target:  5'- uGAC-UCAGGGUGUCUaUGGuGCACu- -3'
miRNA:   3'- gUUGaAGUCCCACGGG-ACCuUGUGcg -5'
3798 5' -53.8 NC_001650.1 + 81588 0.66 0.97358
Target:  5'- gGGCcUCGGGGUcGCCCgacgcgaGGucgccgcacagGGCGCGCg -3'
miRNA:   3'- gUUGaAGUCCCA-CGGGa------CC-----------UUGUGCG- -5'
3798 5' -53.8 NC_001650.1 + 110331 0.66 0.97358
Target:  5'- gAACUgCAGGuccGUGCCgCUGGuGGCGgGCg -3'
miRNA:   3'- gUUGAaGUCC---CACGG-GACC-UUGUgCG- -5'
3798 5' -53.8 NC_001650.1 + 38661 0.66 0.970796
Target:  5'- gGACUUCAuccacGUCCUGGGggACGCGCa -3'
miRNA:   3'- gUUGAAGUccca-CGGGACCU--UGUGCG- -5'
3798 5' -53.8 NC_001650.1 + 44061 0.66 0.970796
Target:  5'- aAAUUUUuGGG-GCCCUGGAuuuuGCAccuCGCu -3'
miRNA:   3'- gUUGAAGuCCCaCGGGACCU----UGU---GCG- -5'
3798 5' -53.8 NC_001650.1 + 70479 0.66 0.970796
Target:  5'- ---gUUUGGGGUggacGCCCUGGAgaggggGCugGUg -3'
miRNA:   3'- guugAAGUCCCA----CGGGACCU------UGugCG- -5'
3798 5' -53.8 NC_001650.1 + 94378 0.66 0.970796
Target:  5'- gGGCUggacgCGGGGgacgaggGCuaCCUGG-ACGCGCu -3'
miRNA:   3'- gUUGAa----GUCCCa------CG--GGACCuUGUGCG- -5'
3798 5' -53.8 NC_001650.1 + 52591 0.66 0.967808
Target:  5'- uCGGCUUCGcccGGGaGCUCUGGGaugggggccACugGCc -3'
miRNA:   3'- -GUUGAAGU---CCCaCGGGACCU---------UGugCG- -5'
3798 5' -53.8 NC_001650.1 + 27202 0.66 0.967808
Target:  5'- gCAGCagCAGGGcguggggGCUCUGGAuuuaccuCugGCg -3'
miRNA:   3'- -GUUGaaGUCCCa------CGGGACCUu------GugCG- -5'
3798 5' -53.8 NC_001650.1 + 56282 0.66 0.967808
Target:  5'- gGACggggGGGGUGgugCCUGGcGCGCGCc -3'
miRNA:   3'- gUUGaag-UCCCACg--GGACCuUGUGCG- -5'
3798 5' -53.8 NC_001650.1 + 88918 0.66 0.967808
Target:  5'- --uCUUCAGGGcccugcugGCCa-GGAccACGCGCg -3'
miRNA:   3'- guuGAAGUCCCa-------CGGgaCCU--UGUGCG- -5'
3798 5' -53.8 NC_001650.1 + 120349 0.66 0.967498
Target:  5'- aGAaagUCAGGGUGCugguggaCCUGGAGuC-CGCc -3'
miRNA:   3'- gUUga-AGUCCCACG-------GGACCUU-GuGCG- -5'
3798 5' -53.8 NC_001650.1 + 131443 0.66 0.96461
Target:  5'- -cACgugCAGGGcGUCCUGGAcgccuacCGCGCc -3'
miRNA:   3'- guUGaa-GUCCCaCGGGACCUu------GUGCG- -5'
3798 5' -53.8 NC_001650.1 + 164854 0.67 0.962588
Target:  5'- cCAGCUaUGGGGcgggaggaugggagGCCCUGacuaGAGCGCGCc -3'
miRNA:   3'- -GUUGAaGUCCCa-------------CGGGAC----CUUGUGCG- -5'
3798 5' -53.8 NC_001650.1 + 30420 0.67 0.961195
Target:  5'- ------gAGGGcGCCCUGGAG-GCGCu -3'
miRNA:   3'- guugaagUCCCaCGGGACCUUgUGCG- -5'
3798 5' -53.8 NC_001650.1 + 41289 0.67 0.955269
Target:  5'- gCggUUUCGGGGUauguaaacucaaaucGCCC--GAGCGCGCc -3'
miRNA:   3'- -GuuGAAGUCCCA---------------CGGGacCUUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.