miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3799 5' -61.2 NC_001650.1 + 138789 0.66 0.763409
Target:  5'- -cGCCCU-GCCCacuagccCAGCGCCGUGgCg -3'
miRNA:   3'- gaCGGGGcCGGGcu-----GUUGCGGUACgG- -5'
3799 5' -61.2 NC_001650.1 + 169829 0.66 0.763409
Target:  5'- -gGCCCCuGGCaacaGAUGACGCagacgGCCa -3'
miRNA:   3'- gaCGGGG-CCGgg--CUGUUGCGgua--CGG- -5'
3799 5' -61.2 NC_001650.1 + 3122 0.66 0.763409
Target:  5'- -gGCCCCuGGCaacaGAUGACGCagacgGCCa -3'
miRNA:   3'- gaCGGGG-CCGgg--CUGUUGCGgua--CGG- -5'
3799 5' -61.2 NC_001650.1 + 48117 0.66 0.763409
Target:  5'- gCUGaCCCUggGGCUgGACAAgGCCGcccccGCCu -3'
miRNA:   3'- -GAC-GGGG--CCGGgCUGUUgCGGUa----CGG- -5'
3799 5' -61.2 NC_001650.1 + 133943 0.66 0.763409
Target:  5'- -aGaCCCCGGCa-GGCGGcCGCaGUGCCc -3'
miRNA:   3'- gaC-GGGGCCGggCUGUU-GCGgUACGG- -5'
3799 5' -61.2 NC_001650.1 + 49752 0.66 0.763409
Target:  5'- -gGCaCCGuGCCCGGCGcgcaGCCgguGUGCCu -3'
miRNA:   3'- gaCGgGGC-CGGGCUGUug--CGG---UACGG- -5'
3799 5' -61.2 NC_001650.1 + 48438 0.66 0.763409
Target:  5'- -gGCCCUGGCCUuucagaGCAugGCg--GCCu -3'
miRNA:   3'- gaCGGGGCCGGGc-----UGUugCGguaCGG- -5'
3799 5' -61.2 NC_001650.1 + 105427 0.66 0.763409
Target:  5'- -aGCgCCGGUCgCGGCGGCGaucucguccCCGcUGCCg -3'
miRNA:   3'- gaCGgGGCCGG-GCUGUUGC---------GGU-ACGG- -5'
3799 5' -61.2 NC_001650.1 + 100694 0.66 0.757971
Target:  5'- -cGCCCCGuGCCUGcACcucucccaccuaucgGGCGCC-UGCa -3'
miRNA:   3'- gaCGGGGC-CGGGC-UG---------------UUGCGGuACGg -5'
3799 5' -61.2 NC_001650.1 + 46354 0.66 0.754326
Target:  5'- --uCCCCGaGCCgGggcGCGGCGCCGcaucgGCCg -3'
miRNA:   3'- gacGGGGC-CGGgC---UGUUGCGGUa----CGG- -5'
3799 5' -61.2 NC_001650.1 + 8562 0.66 0.754326
Target:  5'- -aGCCCCaGCCCuGCGGggUGCCGggguuagGCCc -3'
miRNA:   3'- gaCGGGGcCGGGcUGUU--GCGGUa------CGG- -5'
3799 5' -61.2 NC_001650.1 + 175269 0.66 0.754326
Target:  5'- -aGCCCCaGCCCuGCGGggUGCCGggguuagGCCc -3'
miRNA:   3'- gaCGGGGcCGGGcUGUU--GCGGUa------CGG- -5'
3799 5' -61.2 NC_001650.1 + 156789 0.66 0.754326
Target:  5'- -aGCCCUguuccccgcaGGCCagGACGugGCCggGCa -3'
miRNA:   3'- gaCGGGG----------CCGGg-CUGUugCGGuaCGg -5'
3799 5' -61.2 NC_001650.1 + 134935 0.66 0.754326
Target:  5'- -aGCUCCaGGCCCGGgGGCaGCUcguuGUGCa -3'
miRNA:   3'- gaCGGGG-CCGGGCUgUUG-CGG----UACGg -5'
3799 5' -61.2 NC_001650.1 + 154845 0.66 0.745145
Target:  5'- -aGCCUCGGCCC-ACAG-GCCuuccUGCg -3'
miRNA:   3'- gaCGGGGCCGGGcUGUUgCGGu---ACGg -5'
3799 5' -61.2 NC_001650.1 + 49289 0.66 0.745145
Target:  5'- gCUGCCCCcgGGCCUGGa---GCUG-GCCa -3'
miRNA:   3'- -GACGGGG--CCGGGCUguugCGGUaCGG- -5'
3799 5' -61.2 NC_001650.1 + 51826 0.66 0.745145
Target:  5'- -cGCgCCCGGCcaggCCGuCAAagaGCUcgGCCg -3'
miRNA:   3'- gaCG-GGGCCG----GGCuGUUg--CGGuaCGG- -5'
3799 5' -61.2 NC_001650.1 + 137850 0.66 0.745145
Target:  5'- gUGCCCCGcGgCCGauGCGGCGCCg---- -3'
miRNA:   3'- gACGGGGC-CgGGC--UGUUGCGGuacgg -5'
3799 5' -61.2 NC_001650.1 + 133393 0.66 0.745145
Target:  5'- -cGCCCuCGcGCgCCGGgGcCGCgGUGCCc -3'
miRNA:   3'- gaCGGG-GC-CG-GGCUgUuGCGgUACGG- -5'
3799 5' -61.2 NC_001650.1 + 54659 0.66 0.745145
Target:  5'- cCUGCCCCaGCaCUG-CAGC-CCccGCCg -3'
miRNA:   3'- -GACGGGGcCG-GGCuGUUGcGGuaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.