miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3799 5' -61.2 NC_001650.1 + 58506 0.66 0.735875
Target:  5'- gUGCCCCuccucuGGCCCauggcacACAGgGCCAcgUGCUg -3'
miRNA:   3'- gACGGGG------CCGGGc------UGUUgCGGU--ACGG- -5'
3799 5' -61.2 NC_001650.1 + 90040 0.66 0.726523
Target:  5'- -cGCCCCcgauGCCCGuuGACuGCCugagGCCc -3'
miRNA:   3'- gaCGGGGc---CGGGCugUUG-CGGua--CGG- -5'
3799 5' -61.2 NC_001650.1 + 133309 0.66 0.707606
Target:  5'- gCUGCCCaggaGGCgCCgGGCGaggggACGCCcgaGCCa -3'
miRNA:   3'- -GACGGGg---CCG-GG-CUGU-----UGCGGua-CGG- -5'
3799 5' -61.2 NC_001650.1 + 54659 0.66 0.745145
Target:  5'- cCUGCCCCaGCaCUG-CAGC-CCccGCCg -3'
miRNA:   3'- -GACGGGGcCG-GGCuGUUGcGGuaCGG- -5'
3799 5' -61.2 NC_001650.1 + 48277 0.66 0.707606
Target:  5'- -aGCCCCcuaGCCC-ACAGgGCCAaGCUg -3'
miRNA:   3'- gaCGGGGc--CGGGcUGUUgCGGUaCGG- -5'
3799 5' -61.2 NC_001650.1 + 26734 0.66 0.707606
Target:  5'- -gGgCCCGGCCUGGaGGgGCUGUGCg -3'
miRNA:   3'- gaCgGGGCCGGGCUgUUgCGGUACGg -5'
3799 5' -61.2 NC_001650.1 + 13083 0.66 0.717097
Target:  5'- -cGgCCCGGCCCucugcgguCGAgGCCG-GCCa -3'
miRNA:   3'- gaCgGGGCCGGGcu------GUUgCGGUaCGG- -5'
3799 5' -61.2 NC_001650.1 + 115425 0.66 0.726523
Target:  5'- -gGCCCCGGCCUGcCccACGCacugGUCu -3'
miRNA:   3'- gaCGGGGCCGGGCuGu-UGCGgua-CGG- -5'
3799 5' -61.2 NC_001650.1 + 137850 0.66 0.745145
Target:  5'- gUGCCCCGcGgCCGauGCGGCGCCg---- -3'
miRNA:   3'- gACGGGGC-CgGGC--UGUUGCGGuacgg -5'
3799 5' -61.2 NC_001650.1 + 105427 0.66 0.763409
Target:  5'- -aGCgCCGGUCgCGGCGGCGaucucguccCCGcUGCCg -3'
miRNA:   3'- gaCGgGGCCGG-GCUGUUGC---------GGU-ACGG- -5'
3799 5' -61.2 NC_001650.1 + 24518 0.66 0.707606
Target:  5'- cCUGCUCCuGCCCGGCuGCcCCuacccccugGCCg -3'
miRNA:   3'- -GACGGGGcCGGGCUGuUGcGGua-------CGG- -5'
3799 5' -61.2 NC_001650.1 + 91813 0.66 0.707606
Target:  5'- -aGCCCUGGgCCGugGAC-UCG-GCCg -3'
miRNA:   3'- gaCGGGGCCgGGCugUUGcGGUaCGG- -5'
3799 5' -61.2 NC_001650.1 + 74348 0.66 0.726523
Target:  5'- -gGCCCCGGaCUu-CGugGCCAUGUUc -3'
miRNA:   3'- gaCGGGGCCgGGcuGUugCGGUACGG- -5'
3799 5' -61.2 NC_001650.1 + 25066 0.66 0.717097
Target:  5'- -gGCCagCgGGCCCGcCAugGCCuaccccGCCa -3'
miRNA:   3'- gaCGG--GgCCGGGCuGUugCGGua----CGG- -5'
3799 5' -61.2 NC_001650.1 + 169747 0.66 0.707606
Target:  5'- -aGCCCCcuGGCaacagCUGACGuCGCCggGCCc -3'
miRNA:   3'- gaCGGGG--CCG-----GGCUGUuGCGGuaCGG- -5'
3799 5' -61.2 NC_001650.1 + 115105 0.66 0.707606
Target:  5'- -cGUCCCGGCgCGG--AUGUCGUGCg -3'
miRNA:   3'- gaCGGGGCCGgGCUguUGCGGUACGg -5'
3799 5' -61.2 NC_001650.1 + 62649 0.66 0.726523
Target:  5'- -aGCCCCGaGCCCcuggGGCAucccACGuUCGUGCa -3'
miRNA:   3'- gaCGGGGC-CGGG----CUGU----UGC-GGUACGg -5'
3799 5' -61.2 NC_001650.1 + 50032 0.66 0.717097
Target:  5'- -gGCCCgGGCCUGAgGGgGCUuuggGUCa -3'
miRNA:   3'- gaCGGGgCCGGGCUgUUgCGGua--CGG- -5'
3799 5' -61.2 NC_001650.1 + 47352 0.66 0.707606
Target:  5'- -cGCCCC-GCCCGA--GCGCCucucgcgGCUu -3'
miRNA:   3'- gaCGGGGcCGGGCUguUGCGGua-----CGG- -5'
3799 5' -61.2 NC_001650.1 + 3040 0.66 0.707606
Target:  5'- -aGCCCCcuGGCaacagCUGACGuCGCCggGCCc -3'
miRNA:   3'- gaCGGGG--CCG-----GGCUGUuGCGGuaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.