miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3799 5' -61.2 NC_001650.1 + 183932 0.72 0.385329
Target:  5'- -cGCCUCGG-CCGGCAggggGCGCUGUGCa -3'
miRNA:   3'- gaCGGGGCCgGGCUGU----UGCGGUACGg -5'
3799 5' -61.2 NC_001650.1 + 17225 0.72 0.385329
Target:  5'- -cGCCUCGG-CCGGCAggggGCGCUGUGCa -3'
miRNA:   3'- gaCGGGGCCgGGCUGU----UGCGGUACGg -5'
3799 5' -61.2 NC_001650.1 + 117303 0.72 0.385329
Target:  5'- -cGCCCCGGCCCcaugcucccCGGCcCCAUGCUc -3'
miRNA:   3'- gaCGGGGCCGGGcu-------GUUGcGGUACGG- -5'
3799 5' -61.2 NC_001650.1 + 109168 0.72 0.393304
Target:  5'- cCUGcCCCCGGCCCGAguGgGaCGaGCCg -3'
miRNA:   3'- -GAC-GGGGCCGGGCUguUgCgGUaCGG- -5'
3799 5' -61.2 NC_001650.1 + 22039 0.72 0.393304
Target:  5'- -gGCCCUGGCCCaccccaaggcgGACGcgcuCGCCAagcUGCCc -3'
miRNA:   3'- gaCGGGGCCGGG-----------CUGUu---GCGGU---ACGG- -5'
3799 5' -61.2 NC_001650.1 + 126261 0.72 0.393304
Target:  5'- -cGCCCCGGCCgCGcCuccCGCCcagcugaggGUGCCg -3'
miRNA:   3'- gaCGGGGCCGG-GCuGuu-GCGG---------UACGG- -5'
3799 5' -61.2 NC_001650.1 + 53338 0.72 0.400573
Target:  5'- ---aCCCGGCCgGGCAgauccugugagauGCGCCggGCCg -3'
miRNA:   3'- gacgGGGCCGGgCUGU-------------UGCGGuaCGG- -5'
3799 5' -61.2 NC_001650.1 + 131427 0.72 0.401386
Target:  5'- cCUGCgCCCGGgcCCCGAgGGcCGCCGccGCCg -3'
miRNA:   3'- -GACG-GGGCC--GGGCUgUU-GCGGUa-CGG- -5'
3799 5' -61.2 NC_001650.1 + 161736 0.72 0.417864
Target:  5'- -gGCCCauGCCgGGCGGCGCCGcGCUc -3'
miRNA:   3'- gaCGGGgcCGGgCUGUUGCGGUaCGG- -5'
3799 5' -61.2 NC_001650.1 + 105962 0.72 0.417864
Target:  5'- cCUGCUcaaCCGGCCCcaguacucgGACGACGCCggGUa -3'
miRNA:   3'- -GACGG---GGCCGGG---------CUGUUGCGGuaCGg -5'
3799 5' -61.2 NC_001650.1 + 27413 0.71 0.426255
Target:  5'- -cGCCCgGuGCCCGGCcACGUCcugGCCu -3'
miRNA:   3'- gaCGGGgC-CGGGCUGuUGCGGua-CGG- -5'
3799 5' -61.2 NC_001650.1 + 121060 0.71 0.452017
Target:  5'- -cGCCCU-GCCCGGgGACGCCGcgGCg -3'
miRNA:   3'- gaCGGGGcCGGGCUgUUGCGGUa-CGg -5'
3799 5' -61.2 NC_001650.1 + 31287 0.71 0.460792
Target:  5'- -aGCCCCucaaGCCCGACGgggGCGCUucAUGCg -3'
miRNA:   3'- gaCGGGGc---CGGGCUGU---UGCGG--UACGg -5'
3799 5' -61.2 NC_001650.1 + 134865 0.71 0.469656
Target:  5'- -gGCUCUGGUCCug-AugGCCGUGCCa -3'
miRNA:   3'- gaCGGGGCCGGGcugUugCGGUACGG- -5'
3799 5' -61.2 NC_001650.1 + 79084 0.71 0.469656
Target:  5'- -gGCCCCgGGCCUGGCuccgGGCGCg--GCCg -3'
miRNA:   3'- gaCGGGG-CCGGGCUG----UUGCGguaCGG- -5'
3799 5' -61.2 NC_001650.1 + 41421 0.71 0.469656
Target:  5'- -aGCUCCGGCuuGACccccgucuGgGCCcgGCCg -3'
miRNA:   3'- gaCGGGGCCGggCUGu-------UgCGGuaCGG- -5'
3799 5' -61.2 NC_001650.1 + 127200 0.7 0.478606
Target:  5'- -gGCCCCGGUCUcccgGGCGGCGgaggaCAUGCUg -3'
miRNA:   3'- gaCGGGGCCGGG----CUGUUGCg----GUACGG- -5'
3799 5' -61.2 NC_001650.1 + 111499 0.7 0.478606
Target:  5'- uCUGCCCCaccagcuuGGCCCucucguggguGGCGAcCGCC-UGCCc -3'
miRNA:   3'- -GACGGGG--------CCGGG----------CUGUU-GCGGuACGG- -5'
3799 5' -61.2 NC_001650.1 + 73011 0.7 0.478606
Target:  5'- cCUGCUCCuGCCUGGgGGCGCgG-GCCg -3'
miRNA:   3'- -GACGGGGcCGGGCUgUUGCGgUaCGG- -5'
3799 5' -61.2 NC_001650.1 + 134055 0.7 0.478606
Target:  5'- -aGCCCCGGCCCagcuucaggGACcuccucagagAGCugcuagagaagGCCAUGCCc -3'
miRNA:   3'- gaCGGGGCCGGG---------CUG----------UUG-----------CGGUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.