miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3799 5' -61.2 NC_001650.1 + 51826 0.66 0.745145
Target:  5'- -cGCgCCCGGCcaggCCGuCAAagaGCUcgGCCg -3'
miRNA:   3'- gaCG-GGGCCG----GGCuGUUg--CGGuaCGG- -5'
3799 5' -61.2 NC_001650.1 + 26056 0.66 0.744222
Target:  5'- -gGCCUacagcggCGGCCUGA--GCGCCG-GCCu -3'
miRNA:   3'- gaCGGG-------GCCGGGCUguUGCGGUaCGG- -5'
3799 5' -61.2 NC_001650.1 + 117803 0.66 0.743298
Target:  5'- gCUGCCCCGGCaCCcucccccuCGCCccucGCCc -3'
miRNA:   3'- -GACGGGGCCG-GGcuguu---GCGGua--CGG- -5'
3799 5' -61.2 NC_001650.1 + 72651 0.66 0.735875
Target:  5'- cCUGCCCCGugaacaCCCaGC-ACGCCAggGUCa -3'
miRNA:   3'- -GACGGGGCc-----GGGcUGuUGCGGUa-CGG- -5'
3799 5' -61.2 NC_001650.1 + 164639 0.66 0.735875
Target:  5'- -cGCCCCGGgCCGcGCGGCaCCcgGgCu -3'
miRNA:   3'- gaCGGGGCCgGGC-UGUUGcGGuaCgG- -5'
3799 5' -61.2 NC_001650.1 + 70809 0.66 0.735875
Target:  5'- -gGUaCUGGagaccaCCGACAACGUCAUGCg -3'
miRNA:   3'- gaCGgGGCCg-----GGCUGUUGCGGUACGg -5'
3799 5' -61.2 NC_001650.1 + 141689 0.66 0.735875
Target:  5'- gUGUgaCGGUCCGGgcGCGCCGgugGCCa -3'
miRNA:   3'- gACGggGCCGGGCUguUGCGGUa--CGG- -5'
3799 5' -61.2 NC_001650.1 + 58506 0.66 0.735875
Target:  5'- gUGCCCCuccucuGGCCCauggcacACAGgGCCAcgUGCUg -3'
miRNA:   3'- gACGGGG------CCGGGc------UGUUgCGGU--ACGG- -5'
3799 5' -61.2 NC_001650.1 + 125831 0.66 0.735875
Target:  5'- -cGuCCCCGGCCCc-CGAgaGCC-UGCCc -3'
miRNA:   3'- gaC-GGGGCCGGGcuGUUg-CGGuACGG- -5'
3799 5' -61.2 NC_001650.1 + 152497 0.66 0.726523
Target:  5'- -cGCCCgCGGCgucgaGACAAUagGCCAggGCCa -3'
miRNA:   3'- gaCGGG-GCCGgg---CUGUUG--CGGUa-CGG- -5'
3799 5' -61.2 NC_001650.1 + 126393 0.66 0.726523
Target:  5'- gCUGCCaCC-GCCCGgaGCGAUGCCcuucgcGCCc -3'
miRNA:   3'- -GACGG-GGcCGGGC--UGUUGCGGua----CGG- -5'
3799 5' -61.2 NC_001650.1 + 90040 0.66 0.726523
Target:  5'- -cGCCCCcgauGCCCGuuGACuGCCugagGCCc -3'
miRNA:   3'- gaCGGGGc---CGGGCugUUG-CGGua--CGG- -5'
3799 5' -61.2 NC_001650.1 + 115425 0.66 0.726523
Target:  5'- -gGCCCCGGCCUGcCccACGCacugGUCu -3'
miRNA:   3'- gaCGGGGCCGGGCuGu-UGCGgua-CGG- -5'
3799 5' -61.2 NC_001650.1 + 62649 0.66 0.726523
Target:  5'- -aGCCCCGaGCCCcuggGGCAucccACGuUCGUGCa -3'
miRNA:   3'- gaCGGGGC-CGGG----CUGU----UGC-GGUACGg -5'
3799 5' -61.2 NC_001650.1 + 74348 0.66 0.726523
Target:  5'- -gGCCCCGGaCUu-CGugGCCAUGUUc -3'
miRNA:   3'- gaCGGGGCCgGGcuGUugCGGUACGG- -5'
3799 5' -61.2 NC_001650.1 + 50032 0.66 0.717097
Target:  5'- -gGCCCgGGCCUGAgGGgGCUuuggGUCa -3'
miRNA:   3'- gaCGGGgCCGGGCUgUUgCGGua--CGG- -5'
3799 5' -61.2 NC_001650.1 + 13083 0.66 0.717097
Target:  5'- -cGgCCCGGCCCucugcgguCGAgGCCG-GCCa -3'
miRNA:   3'- gaCgGGGCCGGGcu------GUUgCGGUaCGG- -5'
3799 5' -61.2 NC_001650.1 + 179790 0.66 0.717097
Target:  5'- -cGgCCCGGCCCucugcgguCGAgGCCG-GCCa -3'
miRNA:   3'- gaCgGGGCCGGGcu------GUUgCGGUaCGG- -5'
3799 5' -61.2 NC_001650.1 + 25066 0.66 0.717097
Target:  5'- -gGCCagCgGGCCCGcCAugGCCuaccccGCCa -3'
miRNA:   3'- gaCGG--GgCCGGGCuGUugCGGua----CGG- -5'
3799 5' -61.2 NC_001650.1 + 132952 0.66 0.717097
Target:  5'- -aGCCCaucaGCCCGaaccuGCGGuCGCCAUcGCCg -3'
miRNA:   3'- gaCGGGgc--CGGGC-----UGUU-GCGGUA-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.