miRNA display CGI


Results 41 - 60 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3799 5' -61.2 NC_001650.1 + 26734 0.66 0.707606
Target:  5'- -gGgCCCGGCCUGGaGGgGCUGUGCg -3'
miRNA:   3'- gaCgGGGCCGGGCUgUUgCGGUACGg -5'
3799 5' -61.2 NC_001650.1 + 24518 0.66 0.707606
Target:  5'- cCUGCUCCuGCCCGGCuGCcCCuacccccugGCCg -3'
miRNA:   3'- -GACGGGGcCGGGCUGuUGcGGua-------CGG- -5'
3799 5' -61.2 NC_001650.1 + 133309 0.66 0.707606
Target:  5'- gCUGCCCaggaGGCgCCgGGCGaggggACGCCcgaGCCa -3'
miRNA:   3'- -GACGGGg---CCG-GG-CUGU-----UGCGGua-CGG- -5'
3799 5' -61.2 NC_001650.1 + 91813 0.66 0.707606
Target:  5'- -aGCCCUGGgCCGugGAC-UCG-GCCg -3'
miRNA:   3'- gaCGGGGCCgGGCugUUGcGGUaCGG- -5'
3799 5' -61.2 NC_001650.1 + 3040 0.66 0.707606
Target:  5'- -aGCCCCcuGGCaacagCUGACGuCGCCggGCCc -3'
miRNA:   3'- gaCGGGG--CCG-----GGCUGUuGCGGuaCGG- -5'
3799 5' -61.2 NC_001650.1 + 47352 0.66 0.707606
Target:  5'- -cGCCCC-GCCCGA--GCGCCucucgcgGCUu -3'
miRNA:   3'- gaCGGGGcCGGGCUguUGCGGua-----CGG- -5'
3799 5' -61.2 NC_001650.1 + 115105 0.66 0.707606
Target:  5'- -cGUCCCGGCgCGG--AUGUCGUGCg -3'
miRNA:   3'- gaCGGGGCCGgGCUguUGCGGUACGg -5'
3799 5' -61.2 NC_001650.1 + 169747 0.66 0.707606
Target:  5'- -aGCCCCcuGGCaacagCUGACGuCGCCggGCCc -3'
miRNA:   3'- gaCGGGG--CCG-----GGCUGUuGCGGuaCGG- -5'
3799 5' -61.2 NC_001650.1 + 48277 0.66 0.707606
Target:  5'- -aGCCCCcuaGCCC-ACAGgGCCAaGCUg -3'
miRNA:   3'- gaCGGGGc--CGGGcUGUUgCGGUaCGG- -5'
3799 5' -61.2 NC_001650.1 + 123941 0.67 0.698056
Target:  5'- -cGCCCagCGGCCUcagccGCAGCaGCCGgcgGCCa -3'
miRNA:   3'- gaCGGG--GCCGGGc----UGUUG-CGGUa--CGG- -5'
3799 5' -61.2 NC_001650.1 + 68860 0.67 0.698056
Target:  5'- -cGCCCCGGgCC--CAugGCC--GCCa -3'
miRNA:   3'- gaCGGGGCCgGGcuGUugCGGuaCGG- -5'
3799 5' -61.2 NC_001650.1 + 110893 0.67 0.688457
Target:  5'- -gGUCCUGGCa-GugGACGCCcAUGUCc -3'
miRNA:   3'- gaCGGGGCCGggCugUUGCGG-UACGG- -5'
3799 5' -61.2 NC_001650.1 + 125205 0.67 0.688457
Target:  5'- -cGCCCCGGaggCGACGGgGCCccgGCUu -3'
miRNA:   3'- gaCGGGGCCgg-GCUGUUgCGGua-CGG- -5'
3799 5' -61.2 NC_001650.1 + 22489 0.67 0.688457
Target:  5'- -gGCgCC-GCCCGGCAugGgCCccGCCu -3'
miRNA:   3'- gaCGgGGcCGGGCUGUugC-GGuaCGG- -5'
3799 5' -61.2 NC_001650.1 + 52409 0.67 0.688457
Target:  5'- -cGCCCCGGCCUGAacaggAAgGCCcUGg- -3'
miRNA:   3'- gaCGGGGCCGGGCUg----UUgCGGuACgg -5'
3799 5' -61.2 NC_001650.1 + 52620 0.67 0.685568
Target:  5'- -gGCCaCUGGCCCGGgGguccucggcaccucGCGCCAgaccgugaGCCu -3'
miRNA:   3'- gaCGG-GGCCGGGCUgU--------------UGCGGUa-------CGG- -5'
3799 5' -61.2 NC_001650.1 + 28026 0.67 0.678815
Target:  5'- -gGCCCUGGCCgGGCAGUGCgggGUGaCCc -3'
miRNA:   3'- gaCGGGGCCGGgCUGUUGCGg--UAC-GG- -5'
3799 5' -61.2 NC_001650.1 + 26216 0.67 0.678815
Target:  5'- -gGCCUCgGGCUaCGAgGACGCCGU-CCa -3'
miRNA:   3'- gaCGGGG-CCGG-GCUgUUGCGGUAcGG- -5'
3799 5' -61.2 NC_001650.1 + 73481 0.67 0.678815
Target:  5'- cCUGCCaCGGCCCcccgGGCcucaGCCAcgGCCa -3'
miRNA:   3'- -GACGGgGCCGGG----CUGuug-CGGUa-CGG- -5'
3799 5' -61.2 NC_001650.1 + 82876 0.67 0.678815
Target:  5'- cCUGCCC---CCCGACAgggucuuccaugACGCUAUGCa -3'
miRNA:   3'- -GACGGGgccGGGCUGU------------UGCGGUACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.