miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3799 5' -61.2 NC_001650.1 + 26216 0.67 0.678815
Target:  5'- -gGCCUCgGGCUaCGAgGACGCCGU-CCa -3'
miRNA:   3'- gaCGGGG-CCGG-GCUgUUGCGGUAcGG- -5'
3799 5' -61.2 NC_001650.1 + 26734 0.66 0.707606
Target:  5'- -gGgCCCGGCCUGGaGGgGCUGUGCg -3'
miRNA:   3'- gaCgGGGCCGGGCUgUUgCGGUACGg -5'
3799 5' -61.2 NC_001650.1 + 27413 0.71 0.426255
Target:  5'- -cGCCCgGuGCCCGGCcACGUCcugGCCu -3'
miRNA:   3'- gaCGGGgC-CGGGCUGuUGCGGua-CGG- -5'
3799 5' -61.2 NC_001650.1 + 28026 0.67 0.678815
Target:  5'- -gGCCCUGGCCgGGCAGUGCgggGUGaCCc -3'
miRNA:   3'- gaCGGGGCCGGgCUGUUGCGg--UAC-GG- -5'
3799 5' -61.2 NC_001650.1 + 31287 0.71 0.460792
Target:  5'- -aGCCCCucaaGCCCGACGgggGCGCUucAUGCg -3'
miRNA:   3'- gaCGGGGc---CGGGCUGU---UGCGG--UACGg -5'
3799 5' -61.2 NC_001650.1 + 31717 0.79 0.140809
Target:  5'- -gGCCCUGGCCuauugucuCGACGccgcggGCGCCAUGCCc -3'
miRNA:   3'- gaCGGGGCCGG--------GCUGU------UGCGGUACGG- -5'
3799 5' -61.2 NC_001650.1 + 38481 0.69 0.543376
Target:  5'- cCUGCCCgccaUGGCCCuGC--CGCCcUGCCa -3'
miRNA:   3'- -GACGGG----GCCGGGcUGuuGCGGuACGG- -5'
3799 5' -61.2 NC_001650.1 + 41421 0.71 0.469656
Target:  5'- -aGCUCCGGCuuGACccccgucuGgGCCcgGCCg -3'
miRNA:   3'- gaCGGGGCCGggCUGu-------UgCGGuaCGG- -5'
3799 5' -61.2 NC_001650.1 + 41497 0.69 0.572036
Target:  5'- -gGCgCCUGGUCuCGGCcGCGCCGccGCCg -3'
miRNA:   3'- gaCG-GGGCCGG-GCUGuUGCGGUa-CGG- -5'
3799 5' -61.2 NC_001650.1 + 46354 0.66 0.754326
Target:  5'- --uCCCCGaGCCgGggcGCGGCGCCGcaucgGCCg -3'
miRNA:   3'- gacGGGGC-CGGgC---UGUUGCGGUa----CGG- -5'
3799 5' -61.2 NC_001650.1 + 46503 0.67 0.648737
Target:  5'- uCU-CCCCGGCgucggggCCGGCGGCGaCCGggcGCCc -3'
miRNA:   3'- -GAcGGGGCCG-------GGCUGUUGC-GGUa--CGG- -5'
3799 5' -61.2 NC_001650.1 + 47352 0.66 0.707606
Target:  5'- -cGCCCC-GCCCGA--GCGCCucucgcgGCUu -3'
miRNA:   3'- gaCGGGGcCGGGCUguUGCGGua-----CGG- -5'
3799 5' -61.2 NC_001650.1 + 48117 0.66 0.763409
Target:  5'- gCUGaCCCUggGGCUgGACAAgGCCGcccccGCCu -3'
miRNA:   3'- -GAC-GGGG--CCGGgCUGUUgCGGUa----CGG- -5'
3799 5' -61.2 NC_001650.1 + 48277 0.66 0.707606
Target:  5'- -aGCCCCcuaGCCC-ACAGgGCCAaGCUg -3'
miRNA:   3'- gaCGGGGc--CGGGcUGUUgCGGUaCGG- -5'
3799 5' -61.2 NC_001650.1 + 48438 0.66 0.763409
Target:  5'- -gGCCCUGGCCUuucagaGCAugGCg--GCCu -3'
miRNA:   3'- gaCGGGGCCGGGc-----UGUugCGguaCGG- -5'
3799 5' -61.2 NC_001650.1 + 49289 0.66 0.745145
Target:  5'- gCUGCCCCcgGGCCUGGa---GCUG-GCCa -3'
miRNA:   3'- -GACGGGG--CCGGGCUguugCGGUaCGG- -5'
3799 5' -61.2 NC_001650.1 + 49752 0.66 0.763409
Target:  5'- -gGCaCCGuGCCCGGCGcgcaGCCgguGUGCCu -3'
miRNA:   3'- gaCGgGGC-CGGGCUGUug--CGG---UACGG- -5'
3799 5' -61.2 NC_001650.1 + 50032 0.66 0.717097
Target:  5'- -gGCCCgGGCCUGAgGGgGCUuuggGUCa -3'
miRNA:   3'- gaCGGGgCCGGGCUgUUgCGGua--CGG- -5'
3799 5' -61.2 NC_001650.1 + 50833 0.7 0.496753
Target:  5'- -gGCCCCGGCgCgCGAgGGCGgCGagcUGCCc -3'
miRNA:   3'- gaCGGGGCCG-G-GCUgUUGCgGU---ACGG- -5'
3799 5' -61.2 NC_001650.1 + 51133 0.67 0.669138
Target:  5'- cCUGCaCCUGGCUCGc---CGCCG-GCCg -3'
miRNA:   3'- -GACG-GGGCCGGGCuguuGCGGUaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.