miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3799 5' -61.2 NC_001650.1 + 147499 0.69 0.562437
Target:  5'- -aGCCCaguGGCCCGu---CGCCGUGgCg -3'
miRNA:   3'- gaCGGGg--CCGGGCuguuGCGGUACgG- -5'
3799 5' -61.2 NC_001650.1 + 72487 0.69 0.562437
Target:  5'- -gGCCCUGGCCCucgccuACAACGggcCCGUGUa -3'
miRNA:   3'- gaCGGGGCCGGGc-----UGUUGC---GGUACGg -5'
3799 5' -61.2 NC_001650.1 + 53338 0.72 0.400573
Target:  5'- ---aCCCGGCCgGGCAgauccugugagauGCGCCggGCCg -3'
miRNA:   3'- gacgGGGCCGGgCUGU-------------UGCGGuaCGG- -5'
3799 5' -61.2 NC_001650.1 + 109168 0.72 0.393304
Target:  5'- cCUGcCCCCGGCCCGAguGgGaCGaGCCg -3'
miRNA:   3'- -GAC-GGGGCCGGGCUguUgCgGUaCGG- -5'
3799 5' -61.2 NC_001650.1 + 22039 0.72 0.393304
Target:  5'- -gGCCCUGGCCCaccccaaggcgGACGcgcuCGCCAagcUGCCc -3'
miRNA:   3'- gaCGGGGCCGGG-----------CUGUu---GCGGU---ACGG- -5'
3799 5' -61.2 NC_001650.1 + 131625 0.72 0.37746
Target:  5'- gCUGCuggccaCCCGGCCCGagcugGCGGcCGCC-UGCCu -3'
miRNA:   3'- -GACG------GGGCCGGGC-----UGUU-GCGGuACGG- -5'
3799 5' -61.2 NC_001650.1 + 121393 0.74 0.3185
Target:  5'- -cGCCCCGG-CCGGgGGCGCC--GCCu -3'
miRNA:   3'- gaCGGGGCCgGGCUgUUGCGGuaCGG- -5'
3799 5' -61.2 NC_001650.1 + 24080 0.74 0.311636
Target:  5'- -gGCCCUGG-CCGAgAugGCCAUGgCg -3'
miRNA:   3'- gaCGGGGCCgGGCUgUugCGGUACgG- -5'
3799 5' -61.2 NC_001650.1 + 142896 0.76 0.243508
Target:  5'- -cGCCCCGGCCCGuGCAgccggcGCGCUcgGgCg -3'
miRNA:   3'- gaCGGGGCCGGGC-UGU------UGCGGuaCgG- -5'
3799 5' -61.2 NC_001650.1 + 31717 0.79 0.140809
Target:  5'- -gGCCCUGGCCuauugucuCGACGccgcggGCGCCAUGCCc -3'
miRNA:   3'- gaCGGGGCCGG--------GCUGU------UGCGGUACGG- -5'
3799 5' -61.2 NC_001650.1 + 105962 0.72 0.417864
Target:  5'- cCUGCUcaaCCGGCCCcaguacucgGACGACGCCggGUa -3'
miRNA:   3'- -GACGG---GGCCGGG---------CUGUUGCGGuaCGg -5'
3799 5' -61.2 NC_001650.1 + 121060 0.71 0.452017
Target:  5'- -cGCCCU-GCCCGGgGACGCCGcgGCg -3'
miRNA:   3'- gaCGGGGcCGGGCUgUUGCGGUa-CGg -5'
3799 5' -61.2 NC_001650.1 + 122462 0.69 0.552882
Target:  5'- -aGCCCgGGUaCGugGACGugcCCGUGCCc -3'
miRNA:   3'- gaCGGGgCCGgGCugUUGC---GGUACGG- -5'
3799 5' -61.2 NC_001650.1 + 121648 0.7 0.524532
Target:  5'- cCUGCCCaGGCCCcccGAgGACGaCCuggcgGCCa -3'
miRNA:   3'- -GACGGGgCCGGG---CUgUUGC-GGua---CGG- -5'
3799 5' -61.2 NC_001650.1 + 50833 0.7 0.496753
Target:  5'- -gGCCCCGGCgCgCGAgGGCGgCGagcUGCCc -3'
miRNA:   3'- gaCGGGGCCG-G-GCUgUUGCgGU---ACGG- -5'
3799 5' -61.2 NC_001650.1 + 85686 0.7 0.495838
Target:  5'- cCUGaCCCCGGCCC-ACAAgucccucuacgacUGCCugcggGCCa -3'
miRNA:   3'- -GAC-GGGGCCGGGcUGUU-------------GCGGua---CGG- -5'
3799 5' -61.2 NC_001650.1 + 136592 0.7 0.48764
Target:  5'- -aGCCCCaGGCCCGAagacaAAC-CCA-GCCc -3'
miRNA:   3'- gaCGGGG-CCGGGCUg----UUGcGGUaCGG- -5'
3799 5' -61.2 NC_001650.1 + 127200 0.7 0.478606
Target:  5'- -gGCCCCGGUCUcccgGGCGGCGgaggaCAUGCUg -3'
miRNA:   3'- gaCGGGGCCGGG----CUGUUGCg----GUACGG- -5'
3799 5' -61.2 NC_001650.1 + 79084 0.71 0.469656
Target:  5'- -gGCCCCgGGCCUGGCuccgGGCGCg--GCCg -3'
miRNA:   3'- gaCGGGG-CCGGGCUG----UUGCGguaCGG- -5'
3799 5' -61.2 NC_001650.1 + 31287 0.71 0.460792
Target:  5'- -aGCCCCucaaGCCCGACGgggGCGCUucAUGCg -3'
miRNA:   3'- gaCGGGGc---CGGGCUGU---UGCGG--UACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.