miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3800 5' -55.1 NC_001650.1 + 25654 0.66 0.958473
Target:  5'- gGGUGCucgagaACGAGGCCCaaaagcuGUCcuUGACu -3'
miRNA:   3'- -CCACG------UGCUCCGGGac-----CAGuuACUGu -5'
3800 5' -55.1 NC_001650.1 + 116066 0.66 0.954706
Target:  5'- aGGUGCAC--GGCCCcgGGcUggUGGCu -3'
miRNA:   3'- -CCACGUGcuCCGGGa-CCaGuuACUGu -5'
3800 5' -55.1 NC_001650.1 + 95294 0.66 0.954706
Target:  5'- --cGCGCGuGGUCCUGGcCAGcagGGCc -3'
miRNA:   3'- ccaCGUGCuCCGGGACCaGUUa--CUGu -5'
3800 5' -55.1 NC_001650.1 + 60810 0.66 0.954706
Target:  5'- uGGuUGCugGCGAGGCCCUcgagGGUgAAuuucUGAUAg -3'
miRNA:   3'- -CC-ACG--UGCUCCGGGA----CCAgUU----ACUGU- -5'
3800 5' -55.1 NC_001650.1 + 159322 0.66 0.954706
Target:  5'- --cGCGgGGGuGCUCUGGUUGAUGaACAc -3'
miRNA:   3'- ccaCGUgCUC-CGGGACCAGUUAC-UGU- -5'
3800 5' -55.1 NC_001650.1 + 94886 0.66 0.953136
Target:  5'- uGGaGCACGcGGCCCgggccagguccagGGUCAGcagGGCGu -3'
miRNA:   3'- -CCaCGUGCuCCGGGa------------CCAGUUa--CUGU- -5'
3800 5' -55.1 NC_001650.1 + 93725 0.66 0.946493
Target:  5'- cGGUGCACGgacccagaguucGGGCaCCUGcUCAA-GACc -3'
miRNA:   3'- -CCACGUGC------------UCCG-GGACcAGUUaCUGu -5'
3800 5' -55.1 NC_001650.1 + 102640 0.67 0.932436
Target:  5'- cGG-GCGacccCGAGGCCCUGGUgGAg---- -3'
miRNA:   3'- -CCaCGU----GCUCCGGGACCAgUUacugu -5'
3800 5' -55.1 NC_001650.1 + 134422 0.67 0.932436
Target:  5'- uGUGgAgGAGGCCCUGGaCGAgGAg- -3'
miRNA:   3'- cCACgUgCUCCGGGACCaGUUaCUgu -5'
3800 5' -55.1 NC_001650.1 + 83383 0.67 0.927279
Target:  5'- cGG-GC-CGAGGCCCUGccGUCGGUaccagcugagGACGc -3'
miRNA:   3'- -CCaCGuGCUCCGGGAC--CAGUUA----------CUGU- -5'
3800 5' -55.1 NC_001650.1 + 28014 0.67 0.921885
Target:  5'- -cUGCGCGGagauGGCCCUGGcCg--GGCAg -3'
miRNA:   3'- ccACGUGCU----CCGGGACCaGuuaCUGU- -5'
3800 5' -55.1 NC_001650.1 + 164141 0.67 0.921885
Target:  5'- --gGcCGCGGGGCCCcgGGUCAAacuUGuACAu -3'
miRNA:   3'- ccaC-GUGCUCCGGGa-CCAGUU---AC-UGU- -5'
3800 5' -55.1 NC_001650.1 + 60515 0.67 0.916256
Target:  5'- uGGcGC-CGGGGUCCUGGgCAGaGGCGg -3'
miRNA:   3'- -CCaCGuGCUCCGGGACCaGUUaCUGU- -5'
3800 5' -55.1 NC_001650.1 + 135263 0.67 0.916256
Target:  5'- uGGUGCAucUGGGGUCCUG--CAcgGGCAc -3'
miRNA:   3'- -CCACGU--GCUCCGGGACcaGUuaCUGU- -5'
3800 5' -55.1 NC_001650.1 + 110639 0.67 0.915101
Target:  5'- --cGCACGAGGCCCUGccccuggGGCu -3'
miRNA:   3'- ccaCGUGCUCCGGGACcaguua-CUGu -5'
3800 5' -55.1 NC_001650.1 + 134853 0.67 0.91039
Target:  5'- aGUGUAgGuguuGGCUCUGGUCcuGAUGGCc -3'
miRNA:   3'- cCACGUgCu---CCGGGACCAG--UUACUGu -5'
3800 5' -55.1 NC_001650.1 + 27939 0.68 0.904292
Target:  5'- aGUGCGgcAGGCCCUGGUgGcccgcgggcugGUGACc -3'
miRNA:   3'- cCACGUgcUCCGGGACCAgU-----------UACUGu -5'
3800 5' -55.1 NC_001650.1 + 129939 0.68 0.897961
Target:  5'- cGUGUACGAGGCUgUGG-Cg--GGCAc -3'
miRNA:   3'- cCACGUGCUCCGGgACCaGuuaCUGU- -5'
3800 5' -55.1 NC_001650.1 + 67699 0.68 0.884618
Target:  5'- aGGUGCAguuuccagcUGAGGCCCaUGGUCcucgaGAUg -3'
miRNA:   3'- -CCACGU---------GCUCCGGG-ACCAGuua--CUGu -5'
3800 5' -55.1 NC_001650.1 + 75577 0.68 0.884618
Target:  5'- gGGgacagGCGCGAGGCCgggUGGUCGGccagGAUg -3'
miRNA:   3'- -CCa----CGUGCUCCGGg--ACCAGUUa---CUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.