miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3801 3' -52 NC_001650.1 + 10508 0.66 0.991821
Target:  5'- gGGGCUCAGGUUGCUggGCa------ -3'
miRNA:   3'- gCUCGAGUCCGACGAggUGaaauagg -5'
3801 3' -52 NC_001650.1 + 10050 0.66 0.991821
Target:  5'- gGGGCUCAGGUUGCUggGCa------ -3'
miRNA:   3'- gCUCGAGUCCGACGAggUGaaauagg -5'
3801 3' -52 NC_001650.1 + 10396 0.66 0.991821
Target:  5'- gGGGCUCAGGUUGCUggGCa------ -3'
miRNA:   3'- gCUCGAGUCCGACGAggUGaaauagg -5'
3801 3' -52 NC_001650.1 + 176757 0.66 0.991821
Target:  5'- gGGGCUCAGGUUGCUggGCa------ -3'
miRNA:   3'- gCUCGAGUCCGACGAggUGaaauagg -5'
3801 3' -52 NC_001650.1 + 177103 0.66 0.991821
Target:  5'- gGGGCUCAGGUUGCUggGCa------ -3'
miRNA:   3'- gCUCGAGUCCGACGAggUGaaauagg -5'
3801 3' -52 NC_001650.1 + 177215 0.66 0.991821
Target:  5'- gGGGCUCAGGUUGCUggGCa------ -3'
miRNA:   3'- gCUCGAGUCCGACGAggUGaaauagg -5'
3801 3' -52 NC_001650.1 + 162873 0.66 0.991821
Target:  5'- uCGAGC-CGGGCUGCUaguggaCAUg-UGUCa -3'
miRNA:   3'- -GCUCGaGUCCGACGAg-----GUGaaAUAGg -5'
3801 3' -52 NC_001650.1 + 31964 0.66 0.990645
Target:  5'- cCGAGCUUcgcgGGaGCUGCcUCGCggaGUCCg -3'
miRNA:   3'- -GCUCGAG----UC-CGACGaGGUGaaaUAGG- -5'
3801 3' -52 NC_001650.1 + 111753 0.66 0.990645
Target:  5'- aGGGC-CAGGUUGUuaaagUCCACcccAUCCc -3'
miRNA:   3'- gCUCGaGUCCGACG-----AGGUGaaaUAGG- -5'
3801 3' -52 NC_001650.1 + 58444 0.66 0.989339
Target:  5'- cCGGGCUCAGGgaGgUgaACUUUgacaggAUCCa -3'
miRNA:   3'- -GCUCGAGUCCgaCgAggUGAAA------UAGG- -5'
3801 3' -52 NC_001650.1 + 77090 0.66 0.989339
Target:  5'- aCGAGCgCGGGCUcGCccaCCACcUUGUgCa -3'
miRNA:   3'- -GCUCGaGUCCGA-CGa--GGUGaAAUAgG- -5'
3801 3' -52 NC_001650.1 + 48985 0.66 0.987895
Target:  5'- uGGGCcCGGGCcuguacUGCUCCAgg-UGUCUg -3'
miRNA:   3'- gCUCGaGUCCG------ACGAGGUgaaAUAGG- -5'
3801 3' -52 NC_001650.1 + 109166 0.66 0.986959
Target:  5'- gCGAGC-CAGGCggucccGCUCUGCguuucagaggaguaUUGUCCc -3'
miRNA:   3'- -GCUCGaGUCCGa-----CGAGGUGa-------------AAUAGG- -5'
3801 3' -52 NC_001650.1 + 53789 0.67 0.984559
Target:  5'- cCGAGUagGGGUcgGaCUCCACUaucugcUUGUCCc -3'
miRNA:   3'- -GCUCGagUCCGa-C-GAGGUGA------AAUAGG- -5'
3801 3' -52 NC_001650.1 + 111198 0.67 0.984559
Target:  5'- -cGGCUCAGGCgGC-CCGCgccc-CCa -3'
miRNA:   3'- gcUCGAGUCCGaCGaGGUGaaauaGG- -5'
3801 3' -52 NC_001650.1 + 58381 0.67 0.982649
Target:  5'- gGGGCUCGGGCagGCUCU-CgggggCCg -3'
miRNA:   3'- gCUCGAGUCCGa-CGAGGuGaaauaGG- -5'
3801 3' -52 NC_001650.1 + 83883 0.67 0.982649
Target:  5'- gGAGUgCGGGCUGUUUCACUcugacAUCa -3'
miRNA:   3'- gCUCGaGUCCGACGAGGUGAaa---UAGg -5'
3801 3' -52 NC_001650.1 + 151746 0.67 0.982246
Target:  5'- uCGGGCUCGGGUccUGgUCCuggaucugGUCCu -3'
miRNA:   3'- -GCUCGAGUCCG--ACgAGGugaaa---UAGG- -5'
3801 3' -52 NC_001650.1 + 99822 0.67 0.978302
Target:  5'- cCGAuGCUCAGGCcuccgccCUCCACcu--UCCa -3'
miRNA:   3'- -GCU-CGAGUCCGac-----GAGGUGaaauAGG- -5'
3801 3' -52 NC_001650.1 + 36915 0.67 0.975848
Target:  5'- uGAGCUCgcgagGGGCcGgUgCACUUUGUCa -3'
miRNA:   3'- gCUCGAG-----UCCGaCgAgGUGAAAUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.