miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3801 5' -55.6 NC_001650.1 + 30017 0.66 0.948576
Target:  5'- cGAGGUCAGccuccugGGCUACUgcGACCCc -3'
miRNA:   3'- -CUCCAGUCcaua---UCGGUGGacCUGGG- -5'
3801 5' -55.6 NC_001650.1 + 35292 0.66 0.948576
Target:  5'- cGGGGaCGGGcgcgGGCCagggccacacGCCUGuGGCCCu -3'
miRNA:   3'- -CUCCaGUCCaua-UCGG----------UGGAC-CUGGG- -5'
3801 5' -55.6 NC_001650.1 + 91089 0.66 0.948153
Target:  5'- -uGGaCAGGUucugAGCCGCCacggccgUGGcCCCg -3'
miRNA:   3'- cuCCaGUCCAua--UCGGUGG-------ACCuGGG- -5'
3801 5' -55.6 NC_001650.1 + 83146 0.66 0.944246
Target:  5'- aGGGUCAGGgc--GUC-CCUGGAgCUCg -3'
miRNA:   3'- cUCCAGUCCauauCGGuGGACCU-GGG- -5'
3801 5' -55.6 NC_001650.1 + 146324 0.66 0.944246
Target:  5'- uAGG-CGGGguccucGGCCAUCUcGGACCUc -3'
miRNA:   3'- cUCCaGUCCaua---UCGGUGGA-CCUGGG- -5'
3801 5' -55.6 NC_001650.1 + 82436 0.66 0.944246
Target:  5'- aGAGG-CGGGcu--GgUACCUGGGCUCg -3'
miRNA:   3'- -CUCCaGUCCauauCgGUGGACCUGGG- -5'
3801 5' -55.6 NC_001650.1 + 62151 0.66 0.944246
Target:  5'- aGGGUCAGGgggcGCCugAUgUGGGCCa -3'
miRNA:   3'- cUCCAGUCCauauCGG--UGgACCUGGg -5'
3801 5' -55.6 NC_001650.1 + 110700 0.66 0.943353
Target:  5'- gGGGGUCAGGaucaccucgcagGUGGCgAgCUGGccguggcugagGCCCg -3'
miRNA:   3'- -CUCCAGUCCa-----------UAUCGgUgGACC-----------UGGG- -5'
3801 5' -55.6 NC_001650.1 + 114424 0.66 0.939686
Target:  5'- uAGG--GGGUGUGaccGCCaACCUGGACgCCc -3'
miRNA:   3'- cUCCagUCCAUAU---CGG-UGGACCUG-GG- -5'
3801 5' -55.6 NC_001650.1 + 64988 0.66 0.939217
Target:  5'- cGAGGuuUCAGauuuUGUGGCCcaGCCcgggucuUGGACCCu -3'
miRNA:   3'- -CUCC--AGUCc---AUAUCGG--UGG-------ACCUGGG- -5'
3801 5' -55.6 NC_001650.1 + 37522 0.66 0.936837
Target:  5'- -cGGcgugCAGGUucGUgcaggagaccaccaaGGCCAuCCUGGACCUg -3'
miRNA:   3'- cuCCa---GUCCA--UA---------------UCGGU-GGACCUGGG- -5'
3801 5' -55.6 NC_001650.1 + 42120 0.66 0.932908
Target:  5'- cGAGGgCGGGUGaguguuugaagacGGUCGcCCUGGACCa -3'
miRNA:   3'- -CUCCaGUCCAUa------------UCGGU-GGACCUGGg -5'
3801 5' -55.6 NC_001650.1 + 111129 0.66 0.929862
Target:  5'- aGGGUCAGGggacGCgcaACCccGGGCCCu -3'
miRNA:   3'- cUCCAGUCCauauCGg--UGGa-CCUGGG- -5'
3801 5' -55.6 NC_001650.1 + 57455 0.66 0.929346
Target:  5'- aGGGGuUCAGGUaucucacGUAGUagcCCUGGuCCCc -3'
miRNA:   3'- -CUCC-AGUCCA-------UAUCGgu-GGACCuGGG- -5'
3801 5' -55.6 NC_001650.1 + 155123 0.66 0.928828
Target:  5'- uGGGGUUgcggGGGUAguuccUGGCaaaguuccaguCCUGGGCCCu -3'
miRNA:   3'- -CUCCAG----UCCAU-----AUCGgu---------GGACCUGGG- -5'
3801 5' -55.6 NC_001650.1 + 94382 0.66 0.924597
Target:  5'- -uGGacgCGGGggacgagGGCUACCUGGACgCg -3'
miRNA:   3'- cuCCa--GUCCaua----UCGGUGGACCUGgG- -5'
3801 5' -55.6 NC_001650.1 + 167320 0.67 0.919097
Target:  5'- aGGGUCAgccauauuGGUAggaAGCCcCCUGuGACUCa -3'
miRNA:   3'- cUCCAGU--------CCAUa--UCGGuGGAC-CUGGG- -5'
3801 5' -55.6 NC_001650.1 + 613 0.67 0.919097
Target:  5'- aGGGUCAgccauauuGGUAggaAGCCcCCUGuGACUCa -3'
miRNA:   3'- cUCCAGU--------CCAUa--UCGGuGGAC-CUGGG- -5'
3801 5' -55.6 NC_001650.1 + 147485 0.67 0.919097
Target:  5'- aGGGGUCuaugaccGUGGCCcCCUGGuaGCCCu -3'
miRNA:   3'- -CUCCAGucca---UAUCGGuGGACC--UGGG- -5'
3801 5' -55.6 NC_001650.1 + 76108 0.67 0.913946
Target:  5'- cGAGGUCagagaAGGUGUugaccguggucagcuGCCGCCcccGcGACCCg -3'
miRNA:   3'- -CUCCAG-----UCCAUAu--------------CGGUGGa--C-CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.