miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3801 5' -55.6 NC_001650.1 + 605 0.68 0.881228
Target:  5'- cGAGGcCGGGcu--GCCGCCcucccccGGGCCCc -3'
miRNA:   3'- -CUCCaGUCCauauCGGUGGa------CCUGGG- -5'
3801 5' -55.6 NC_001650.1 + 181818 0.69 0.843668
Target:  5'- cGGG-CAGGgu--GCCAgCUGGGCCg -3'
miRNA:   3'- cUCCaGUCCauauCGGUgGACCUGGg -5'
3801 5' -55.6 NC_001650.1 + 29049 0.68 0.850801
Target:  5'- cGGGGcgCGGGggGUGGCCgacgugggggaguACCUGGGCgCg -3'
miRNA:   3'- -CUCCa-GUCCa-UAUCGG-------------UGGACCUGgG- -5'
3801 5' -55.6 NC_001650.1 + 27535 0.68 0.851584
Target:  5'- uGGGcCAcGGgcUGGCCuGCCUGGccgaGCCCa -3'
miRNA:   3'- cUCCaGU-CCauAUCGG-UGGACC----UGGG- -5'
3801 5' -55.6 NC_001650.1 + 49879 0.68 0.851584
Target:  5'- aGAGGccccucgccaUCAGGcg-GGCgACCUGGccGCCCu -3'
miRNA:   3'- -CUCC----------AGUCCauaUCGgUGGACC--UGGG- -5'
3801 5' -55.6 NC_001650.1 + 151742 0.68 0.851584
Target:  5'- aGGGUCGGGcUcgGGuCCugguCCUGGAUCUg -3'
miRNA:   3'- cUCCAGUCC-AuaUC-GGu---GGACCUGGG- -5'
3801 5' -55.6 NC_001650.1 + 142869 0.68 0.859304
Target:  5'- cGAGGccaaCAGGgaaAUGGCCGCCgccgccccGGCCCg -3'
miRNA:   3'- -CUCCa---GUCCa--UAUCGGUGGac------CUGGG- -5'
3801 5' -55.6 NC_001650.1 + 23323 0.68 0.859304
Target:  5'- aGGGUCgcgcagcagugcGGcGUGgGGCC-CCUGGACCUg -3'
miRNA:   3'- cUCCAG------------UC-CAUaUCGGuGGACCUGGG- -5'
3801 5' -55.6 NC_001650.1 + 98579 0.68 0.881228
Target:  5'- cGGGGUCAgGGUGUA-CUuCCUGGACa- -3'
miRNA:   3'- -CUCCAGU-CCAUAUcGGuGGACCUGgg -5'
3801 5' -55.6 NC_001650.1 + 15111 0.69 0.843668
Target:  5'- cGGG-CAGGgu--GCCAgCUGGGCCg -3'
miRNA:   3'- cUCCaGUCCauauCGGUgGACCUGGg -5'
3801 5' -55.6 NC_001650.1 + 98981 0.69 0.827275
Target:  5'- cAGGUCAGGaagGUGGCaGCCUGGGa-- -3'
miRNA:   3'- cUCCAGUCCa--UAUCGgUGGACCUggg -5'
3801 5' -55.6 NC_001650.1 + 42519 0.69 0.827275
Target:  5'- uGGG-CAGGUG-GGCCACC-GGcgcGCCCg -3'
miRNA:   3'- cUCCaGUCCAUaUCGGUGGaCC---UGGG- -5'
3801 5' -55.6 NC_001650.1 + 11113 0.73 0.595501
Target:  5'- uGAGGUCGGGUAU-GCUAaugGGACCa -3'
miRNA:   3'- -CUCCAGUCCAUAuCGGUggaCCUGGg -5'
3801 5' -55.6 NC_001650.1 + 177820 0.73 0.595501
Target:  5'- uGAGGUCGGGUAU-GCUAaugGGACCa -3'
miRNA:   3'- -CUCCAGUCCAUAuCGGUggaCCUGGg -5'
3801 5' -55.6 NC_001650.1 + 114606 0.73 0.605623
Target:  5'- -cGG-CAGGUGcUGGCCACCgaGGACaCCu -3'
miRNA:   3'- cuCCaGUCCAU-AUCGGUGGa-CCUG-GG- -5'
3801 5' -55.6 NC_001650.1 + 3382 0.71 0.696683
Target:  5'- uGGGG-CGGGgc-GGCCAUCUuaGGACCCc -3'
miRNA:   3'- -CUCCaGUCCauaUCGGUGGA--CCUGGG- -5'
3801 5' -55.6 NC_001650.1 + 170089 0.71 0.696683
Target:  5'- uGGGG-CGGGgc-GGCCAUCUuaGGACCCc -3'
miRNA:   3'- -CUCCaGUCCauaUCGGUGGA--CCUGGG- -5'
3801 5' -55.6 NC_001650.1 + 27111 0.71 0.706648
Target:  5'- aGGGUCAGGgacguGCCggGCCUcaucgGGGCCCu -3'
miRNA:   3'- cUCCAGUCCauau-CGG--UGGA-----CCUGGG- -5'
3801 5' -55.6 NC_001650.1 + 116439 0.7 0.791553
Target:  5'- cAGGUCGuGGcUGUgaaagucGGCCACCaGGGCCUg -3'
miRNA:   3'- cUCCAGU-CC-AUA-------UCGGUGGaCCUGGG- -5'
3801 5' -55.6 NC_001650.1 + 24574 0.69 0.810184
Target:  5'- cGGGGuUCGacgcccuggcGGUGUc-CCACCUGGACCUg -3'
miRNA:   3'- -CUCC-AGU----------CCAUAucGGUGGACCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.